View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_11 (Length: 384)
Name: NF6890_low_11
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 16151873 - 16151525
Alignment:
| Q |
14 |
atatagagggattaattaaaaacgaaagccaatgtatttataagtagcaaaacttattttaaagtaattttttgtctctagaatttcaattttattccct |
113 |
Q |
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| T |
16151873 |
atatagagggattaattaaaaacgaaagccaatgtatttataagtagcaaaacttattttaaagtaattttttgtctctataatttcaattttattccct |
16151774 |
T |
|
| Q |
114 |
tatgcaccgtcatgtgtgcatccttaaacaacgattgtcaaattttaagaccaaaaatatttgagtgagcattgtttgaagaaattttttgacagactaa |
213 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
16151773 |
tatgcaccgtcatgtgtgaaaccttaaacaacgattgtcaatttttaagacgaaaaatatttgagggagcattgtttgaagaaattttttgac-gactaa |
16151675 |
T |
|
| Q |
214 |
aaacaaaaagtgatatatttataaaaacggaggacttatttaaaccgtaataaaattcatatctattgagttctacaggtttcaacggataaggttccgt |
313 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16151674 |
aaacaaaa---tatatatttataaaaacgggggacttatttaaaccataataaaattcatatctattgagttctacaggtttcaacggataaggttccgt |
16151578 |
T |
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| Q |
314 |
gttgtcgctggttcagcattttcattcctagattctctgataattgttcaagt |
366 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
16151577 |
gttgtcgctgctttagcattttcattcctagattctctgataattgttcaagt |
16151525 |
T |
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