View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_12 (Length: 368)
Name: NF6890_low_12
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 32139392 - 32139053
Alignment:
| Q |
13 |
aatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactcaagccatggctaattccaattttcaacactt |
112 |
Q |
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| T |
32139392 |
aatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactctagccatggctaattccaattttcaacactt |
32139293 |
T |
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| Q |
113 |
cattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatggggcc |
212 |
Q |
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| T |
32139292 |
cattacaatccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatggggcc |
32139193 |
T |
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| Q |
213 |
acaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcg |
312 |
Q |
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| T |
32139192 |
acaacaaaccaatacaaagctcaaatcaaccagagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcg |
32139093 |
T |
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| Q |
313 |
aaaacaaatacatttcttccacataccgccctgcacgctg |
352 |
Q |
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| T |
32139092 |
aaaacaaatacatttcttccacataccgccctgcacgctg |
32139053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 32148786 - 32148446
Alignment:
| Q |
18 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactcaagccatggctaattccaattttcaac |
108 |
Q |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
|
| Q |
109 |
acttcattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatgg |
208 |
Q |
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| T |
32148686 |
acttcattacaaccctcctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgt |
32148587 |
T |
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| Q |
209 |
ggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgac |
308 |
Q |
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|| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
32148586 |
cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagtcccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgat |
32148487 |
T |
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| Q |
309 |
tgcgaaaacaaatacatttcttccacataccgccctgcacg |
349 |
Q |
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| T |
32148486 |
tgcgaaaaccagtacatttcctccacataccgtcctgcacg |
32148446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 345
Target Start/End: Complemental strand, 32127534 - 32127274
Alignment:
| Q |
86 |
catggctaattccaattttcaacacttcattacaatccttctcctatttttcttcattacaccaactttctctcaacaatctttcaggccaaaagccctt |
185 |
Q |
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|||||||||| |||| || |||||||||||| | | || || |||| |||||||||||||||||||||||||||||||| ||||| || ||||| ||| |
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| T |
32127534 |
catggctaataccaacttccaacacttcatttcccttctccttttattgttcttcattacaccaactttctctcaacaatcattcagacccaaagcactt |
32127435 |
T |
|
| Q |
186 |
gttctccc-agtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctc |
284 |
Q |
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|||||||| ||||||||||||| | || |||||| |||||||| ||||||||| ||||||||||||||| |||||||||| ||| | |||| ||||| |
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| T |
32127434 |
gttctccccagtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccactagtcccactaaaccttgtcgttgatctt |
32127335 |
T |
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| Q |
285 |
ggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctg |
345 |
Q |
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|| ||| | ||||| ||||| ||||| |||||| | |||| ||| |||||||||||||||| |
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| T |
32127334 |
ggcggcaaatttctctgggtcgactgtgaaaaccactacacttcctccacataccgccctg |
32127274 |
T |
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