View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_13 (Length: 347)
Name: NF6890_low_13
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 21794024 - 21794203
Alignment:
| Q |
9 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaa-cacaaatcaac |
107 |
Q |
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| T |
21794024 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcatgttgagttcattaagagacaagtcaataaggttaaccacaaatcagt |
21794123 |
T |
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| Q |
108 |
ataggcagccacatccttacttagcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaa |
187 |
Q |
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| T |
21794124 |
ataggcagacaaatccttacctagcttctatatcttggatgatgtaccgacgtgtataaataatttaattgctaatgaaa |
21794203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 21794206 - 21794309
Alignment:
| Q |
235 |
tgataatgtcatagtga---ccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
331 |
Q |
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| T |
21794206 |
tgataatgtcatggtgatcaccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
21794305 |
T |
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| Q |
332 |
tgat |
335 |
Q |
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|||| |
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| T |
21794306 |
tgat |
21794309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 9834630 - 9834473
Alignment:
| Q |
32 |
tattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaac-acaaatcaacataggcagccacatccttactta |
130 |
Q |
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| T |
9834630 |
tattgttctctttatttaacaaactctcgtgttgggtttactagaagacaagcgaacgaggttgtccacgaattaacaaatgcatccacgtctttactta |
9834531 |
T |
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| Q |
131 |
gcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaat |
188 |
Q |
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| T |
9834530 |
gctcccgtatttttgatgatttaccgacatgtataaataatttgattgctaatgaaat |
9834473 |
T |
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