View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_14 (Length: 339)
Name: NF6890_low_14
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_14 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 25636593 - 25636264
Alignment:
| Q |
10 |
agtgatatgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagctatagccttcgctgcta |
109 |
Q |
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| T |
25636593 |
agtgagatgagcatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagctatagccttcgctgcta |
25636494 |
T |
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| Q |
110 |
tcagaatccatcgaagaaattgaagttgtattatacctctcttgccctacaggtttgatttgaattaaaaagtgatagatgagtccaatggggcccttta |
209 |
Q |
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| T |
25636493 |
tcagaatccatcgaagaaattgaagttgtattatacctcacttgccctacaggtttgatttgaattaaaaagtgatagatgagtccaatggggcccttta |
25636394 |
T |
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| Q |
210 |
caaaggttaaggatccgtctctatttctcacaacgaatgaagttgttcattgctataattttgaagtgaataaaagagataaaatgcacaaattttaaat |
309 |
Q |
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| T |
25636393 |
caaaggttaaggatccgtctctatttctcacaacgaatgaagttgttcattgctataattttgaagtgaataaaagagataaaatgcacaaattttaaat |
25636294 |
T |
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| Q |
310 |
attagtgaagataattagacatttatatac |
339 |
Q |
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| T |
25636293 |
attagtgaagataattagacatttatatac |
25636264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 25478969 - 25479057
Alignment:
| Q |
10 |
agtgatatgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagctatagc |
98 |
Q |
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| T |
25478969 |
agtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacgtcgtatctatatctatagc |
25479057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 25442401 - 25442330
Alignment:
| Q |
10 |
agtgatatgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatc |
81 |
Q |
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| T |
25442401 |
agtgagatgatcgtagagatggtcaacaaaggaattgcgggtgtcaggacctctaaaactgatgaacacatc |
25442330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 25484339 - 25484269
Alignment:
| Q |
23 |
tagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
93 |
Q |
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| T |
25484339 |
tagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagct |
25484269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 35177975 - 35178054
Alignment:
| Q |
16 |
atgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagctat |
95 |
Q |
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| T |
35177975 |
atgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatagctat |
35178054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 35169684 - 35169760
Alignment:
| Q |
16 |
atgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagc |
92 |
Q |
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| T |
35169684 |
atgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacacatcgtatttatagc |
35169760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 35183983 - 35184050
Alignment:
| Q |
26 |
agatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
93 |
Q |
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| T |
35183983 |
agatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatagct |
35184050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 35106024 - 35106101
Alignment:
| Q |
16 |
atgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
93 |
Q |
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| T |
35106024 |
atgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacgtcgtatctatagct |
35106101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 500358 - 500435
Alignment:
| Q |
16 |
atgaacatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct |
93 |
Q |
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|||| |||||||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||||||| ||||||| |
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| T |
500358 |
atgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatctatagct |
500435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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