View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6890_low_17 (Length: 316)
Name: NF6890_low_17
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_17 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
| [»] scaffold0418 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 8654697 - 8654987
Alignment:
| Q |
12 |
tcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654697 |
tcttaggggtagtgttggtgctggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg |
8654796 |
T |
|
| Q |
112 |
tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654797 |
tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg |
8654896 |
T |
|
| Q |
212 |
agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654897 |
agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
8654987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 3129595 - 3129893
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||| | || ||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
3129595 |
gaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatggagctgatacattgtttt |
3129694 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
3129695 |
ggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttctc |
3129794 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
| |||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3129795 |
tattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgtagggctttacttcttgat |
3129891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 46 - 302
Target Start/End: Complemental strand, 47541406 - 47541151
Alignment:
| Q |
46 |
tggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttcc |
145 |
Q |
| |
|
||||||| ||||| ||||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47541406 |
tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt |
47541308 |
T |
|
| Q |
146 |
gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtag |
245 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| | |
|
|
| T |
47541307 |
gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg |
47541208 |
T |
|
| Q |
246 |
gttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47541207 |
tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttgatgt |
47541151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 115 - 302
Target Start/End: Original strand, 7662966 - 7663153
Alignment:
| Q |
115 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
214 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
7662966 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7663065 |
T |
|
| Q |
215 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|| |||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
7663066 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt |
7663153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 302
Target Start/End: Complemental strand, 2631829 - 2631624
Alignment:
| Q |
97 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
196 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2631829 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
2631730 |
T |
|
| Q |
197 |
tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
296 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
2631729 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttct |
2631630 |
T |
|
| Q |
297 |
tgatgt |
302 |
Q |
| |
|
|||||| |
|
|
| T |
2631629 |
tgatgt |
2631624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 302
Target Start/End: Complemental strand, 20675454 - 20675248
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||| || ||||| |||||| |
|
|
| T |
20675454 |
gttttggtctgataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttg |
20675355 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| | |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||| ||||||||| |
|
|
| T |
20675354 |
ctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttc |
20675255 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
20675254 |
ttgatgt |
20675248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 23873240 - 23873390
Alignment:
| Q |
152 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
23873240 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg |
23873339 |
T |
|
| Q |
252 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
23873340 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt |
23873390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 55298996 - 55298846
Alignment:
| Q |
152 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || || |
|
|
| T |
55298996 |
tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg |
55298897 |
T |
|
| Q |
252 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
55298896 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt |
55298846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 302
Target Start/End: Original strand, 8486699 - 8486895
Alignment:
| Q |
106 |
gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg |
205 |
Q |
| |
|
||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || | |||||| | ||||||| |
|
|
| T |
8486699 |
gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg |
8486798 |
T |
|
| Q |
206 |
attcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |||||||||||| |||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
8486799 |
attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgt |
8486895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 49926112 - 49926180
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| ||||||| ||||||||||||||| || |||||||| |
|
|
| T |
49926112 |
gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgt |
49926180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 19648003 - 19647935
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
19648003 |
gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt |
19647935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 29553586 - 29553654
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| ||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
29553586 |
gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgt |
29553654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 134467 - 134768
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134467 |
gaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
134566 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134567 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
134666 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134667 |
tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
134766 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
134767 |
gt |
134768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 312294 - 312595
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312294 |
gaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
312393 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312394 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
312493 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
312494 |
tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
312593 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
312594 |
gt |
312595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 327748 - 328049
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327748 |
gaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
327847 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327848 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
327947 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327948 |
tattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
328047 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
328048 |
gt |
328049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10486533 - 10486834
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| | | ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10486533 |
gaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatggagctgatacgttgtttt |
10486632 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |
|
|
| T |
10486633 |
ggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtctgtggcagacttgttctc |
10486732 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10486733 |
tgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgtagggctttacttcttgat |
10486832 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
10486833 |
gt |
10486834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 67 - 302
Target Start/End: Complemental strand, 34481408 - 34481173
Alignment:
| Q |
67 |
aggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag |
166 |
Q |
| |
|
||||| ||||| ||||| ||| |||| | |||||||| ||||||||||||||||| |||||| ||||||| | || || || ||||||||||||||| |
|
|
| T |
34481408 |
aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag |
34481309 |
T |
|
| Q |
167 |
agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga |
266 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34481308 |
agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg |
34481209 |
T |
|
| Q |
267 |
cttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
34481208 |
gttgctagaggagtgtagggctttacttcttgatgt |
34481173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 587859 - 587742
Alignment:
| Q |
185 |
tggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
284 |
Q |
| |
|
||||| ||||||| ||||| ||||||||| ||||||| | | ||||||||||| |||||| | ||| |||||||||||| |||||| ||||||||| |
|
|
| T |
587859 |
tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag |
587760 |
T |
|
| Q |
285 |
ggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
587759 |
ggctttacttcttgatgt |
587742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 302
Target Start/End: Original strand, 35122359 - 35122620
Alignment:
| Q |
41 |
gtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccg |
140 |
Q |
| |
|
|||| |||||||| ||| |||| ||||| ||| || ||||| ||| ||||||||||||||| |||||||||| | |||||||||||| ||| || |
|
|
| T |
35122359 |
gtggttggtttggggatagtgtgcttaggaaggtgggggatggtgctgatacgttgttttggtctcataggtggtttgatgatgttccttttagtgagcg |
35122458 |
T |
|
| Q |
141 |
tttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggaga |
240 |
Q |
| |
|
|| |||||| ||||||| ||| | ||||| || || |||||||| | |||| ||| |||| ||||||| | |||||| ||||||||||||| |
|
|
| T |
35122459 |
gtttcgtaggttgtttgacttagctgagaacaaaaccatttctgtggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggaga |
35122558 |
T |
|
| Q |
241 |
cgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||| ||||||||| || |||| |||| |||||||||||| |||||||| |
|
|
| T |
35122559 |
cgtaggttgtgggcttgggaggagactttattagaggagcttagggctttactgcttgatgt |
35122620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 27795756 - 27795720
Alignment:
| Q |
255 |
gtgggaggaggacttgttagcggagtgtagggcttta |
291 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
27795756 |
gtgggaggaggacttggtagaggagtgtagggcttta |
27795720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 21528685 - 21528387
Alignment:
| Q |
8 |
gtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttgga |
107 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
21528685 |
gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga |
21528586 |
T |
|
| Q |
108 |
taggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||| |
|
|
| T |
21528585 |
taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat |
21528486 |
T |
|
| Q |
208 |
tcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggag----tgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
21528485 |
tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttgatgt |
21528387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 300
Target Start/End: Complemental strand, 36306251 - 36306012
Alignment:
| Q |
61 |
gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt |
160 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
36306251 |
gtggctaggagggttggagatggttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagt |
36306152 |
T |
|
| Q |
161 |
taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga |
260 |
Q |
| |
|
|||| ||||||||| | |||| ||||||||||||||| |||||||||| ||||||| ||||||| | ||||||||||| ||||| |||||||||||| | |
|
|
| T |
36306151 |
taacggagaataagctcatgtatgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaa |
36306052 |
T |
|
| Q |
261 |
ggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
36306051 |
ggaggagatgttagaggagtgtagggctttacttcttgat |
36306012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 79 - 302
Target Start/End: Complemental strand, 37531015 - 37530792
Alignment:
| Q |
79 |
gatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagttta |
178 |
Q |
| |
|
||||| ||| |||| | |||||||| ||||||||||||||||| |||||| ||||||| | | || || ||||||||||||||||||||||| || |
|
|
| T |
37531015 |
gatggggctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagacta |
37530916 |
T |
|
| Q |
179 |
tgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgga |
278 |
Q |
| |
|
||| ||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||| ||| |
|
|
| T |
37530915 |
tgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagagga |
37530816 |
T |
|
| Q |
279 |
gtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37530815 |
gtgtagggctttacttcttgatgt |
37530792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 32353061 - 32353211
Alignment:
| Q |
152 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
251 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
32353061 |
tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg |
32353160 |
T |
|
| Q |
252 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||| ||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
32353161 |
gcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgt |
32353211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 48073139 - 48073345
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
48073139 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
48073238 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
48073239 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttc |
48073338 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
48073339 |
ttgatgt |
48073345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 48265548 - 48265632
Alignment:
| Q |
218 |
ggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48265548 |
ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttgatgt |
48265632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 30970447 - 30970522
Alignment:
| Q |
227 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||||| || | |||||||||||||| |||||||||||||| |
|
|
| T |
30970447 |
tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgt |
30970522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 16873332 - 16873406
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||| |||| |||||||||||| |||||||| |
|
|
| T |
16873332 |
gtggaggtggagacgtaggttgtgggcttgggaggagattttattagaggagcttagggctttactgcttgatgt |
16873406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 25504839 - 25504907
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
25504839 |
gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt |
25504907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 49731559 - 49731846
Alignment:
| Q |
15 |
taggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggataggtgg |
114 |
Q |
| |
|
||||||||||| ||||| |||||| | || ||||||| ||||| |||||||||||||||||||||||||||| | || ||||||||||| ||||||||| |
|
|
| T |
49731559 |
taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg |
49731658 |
T |
|
| Q |
115 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
49731659 |
ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc |
49731758 |
T |
|
| Q |
215 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49731759 |
agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttgatgt |
49731846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 30166957 - 30167258
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| || || |||| |||||||||| || ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
30166957 |
gaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatacgttgtttt |
30167056 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||||||||||||||| || |
|
|
| T |
30167057 |
ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagacttgttctc |
30167156 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
30167157 |
tgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttgat |
30167256 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
30167257 |
gt |
30167258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 2813208 - 2813414
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
2813208 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
2813307 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
2813308 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
2813407 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
2813408 |
ttgatgt |
2813414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 96 - 302
Target Start/End: Complemental strand, 29309840 - 29309634
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
29309840 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttg |
29309741 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
29309740 |
ctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttc |
29309641 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
29309640 |
ttgatgt |
29309634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 6176186 - 6176392
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||| ||||||||||| |||||| || || |||||| |
|
|
| T |
6176186 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttg |
6176285 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
6176286 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttc |
6176385 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
6176386 |
ttgatgt |
6176392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 9379447 - 9379323
Alignment:
| Q |
178 |
atgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcgg |
277 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||| |
|
|
| T |
9379447 |
atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg |
9379348 |
T |
|
| Q |
278 |
agtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||| ||||| |||||||| |
|
|
| T |
9379347 |
agtgtagggcattactacttgatgt |
9379323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 23602074 - 23601999
Alignment:
| Q |
227 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
23602074 |
tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt |
23601999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 25872955 - 25873022
Alignment:
| Q |
235 |
tggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
25872955 |
tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgt |
25873022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
| Q |
227 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtag |
284 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| || |||| |||||||||||| |
|
|
| T |
8943653 |
tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag |
8943596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 14867625 - 14867699
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||||||| || |||| |||||||||||| ||| | |||||||| |
|
|
| T |
14867625 |
gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttaatacttgatgt |
14867699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
| Q |
256 |
tgggaggaggacttgttagcggagtgtagggctttactt |
294 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
46248738 |
tgggaggaagacttgttaggggagtgtagggctttactt |
46248776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 48569906 - 48569944
Alignment:
| Q |
255 |
gtgggaggaggacttgttagcggagtgtagggctttact |
293 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
48569906 |
gtgggaggaggacttggtagaggagtgtagggctttact |
48569944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 15653318 - 15653619
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || || |||| ||||||| || | |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
15653318 |
gaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggatctgatacgttgtttt |
15653417 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | |||||| ||||||||||||| || |
|
|
| T |
15653418 |
ggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatggcagacttgttctc |
15653517 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15653518 |
tgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggctttacttcttgat |
15653617 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
15653618 |
gt |
15653619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 46624220 - 46623966
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | || || |||| ||||||| || || ||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
46624220 |
gaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggttctgatacgttgtttt |
46624121 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | |||||||||||||||||||| || |
|
|
| T |
46624120 |
ggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagacttgttctc |
46624021 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcag |
255 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
46624020 |
tgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag |
46623966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 302
Target Start/End: Complemental strand, 13440485 - 13440279
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
13440485 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttg |
13440386 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||||| || ||| ||||||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
13440385 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttc |
13440286 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
13440285 |
ttgatgt |
13440279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 12378436 - 12378639
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| | |||| || | | ||| ||||||||||||| ||||||||| | |||||||||||| | ||| |
|
|
| T |
12378436 |
gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg |
12378535 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
|| | |||| | ||| ||| |||||||| ||||| |||| |||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
12378536 |
ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc---acttc |
12378632 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
12378633 |
ttgatgt |
12378639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 45943152 - 45943077
Alignment:
| Q |
227 |
tgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
45943152 |
tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt |
45943077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
| Q |
170 |
ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggactt |
269 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||| | |||| | || ||||| | ||||||||||||||| || ||||||||||| ||||||||||| | |
|
|
| T |
43105669 |
ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat |
43105570 |
T |
|
| Q |
270 |
gttagcggagtgtagggctttact |
293 |
Q |
| |
|
|||||| ||||||||||| ||||| |
|
|
| T |
43105569 |
gttagcagagtgtagggcgttact |
43105546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 41339825 - 41339750
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc |
303 |
Q |
| |
|
|||||||||| || | ||||||||| |||||||||||| || |||| |||||||||| ||||||| |||||||| |
|
|
| T |
41339825 |
gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttactatttgatgtc |
41339750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 19728787 - 19728713
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||||||| || |||| ||||||||||| ||||| |||||||| |
|
|
| T |
19728787 |
gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggtcttactacttgatgt |
19728713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
| Q |
256 |
tgggaggaggacttgttagcggagtgtagggctttactt |
294 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27723973 |
tgggaggaagacttgttaggggagtgtagggctttactt |
27724011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 46623964 - 46623931
Alignment:
| Q |
269 |
tgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
46623964 |
tgttagcagagtgtagggctttacttcttgatgt |
46623931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 45992870 - 45992802
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
45992870 |
gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt |
45992802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 7452879 - 7452578
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || || |||| |||||| | | ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
7452879 |
gaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatggttctgatacgttgtttt |
7452780 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||||| || |
|
|
| T |
7452779 |
ggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagacttgttctc |
7452680 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
|||||||| ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
7452679 |
tgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttacttcttgat |
7452580 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
7452579 |
gt |
7452578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 302
Target Start/End: Original strand, 16420719 - 16420924
Alignment:
| Q |
97 |
ttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgt |
196 |
Q |
| |
|
||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
16420719 |
ttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgc |
16420818 |
T |
|
| Q |
197 |
tatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttct |
296 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
16420819 |
tctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct |
16420918 |
T |
|
| Q |
297 |
tgatgt |
302 |
Q |
| |
|
||||| |
|
|
| T |
16420919 |
cgatgt |
16420924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 19384572 - 19384624
Alignment:
| Q |
250 |
tggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
19384572 |
tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgt |
19384624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttact |
293 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12134628 |
gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact |
12134563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 13879354 - 13879390
Alignment:
| Q |
255 |
gtgggaggaggacttgttagcggagtgtagggcttta |
291 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13879354 |
gtgggaggaggacttggtagaggagtgtagggcttta |
13879390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 45422047 - 45421745
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| || || |||| |||||||||| || ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
45422047 |
gaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatacgttgtttt |
45421948 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| | |||| ||||||||||||||| || |
|
|
| T |
45421947 |
ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagacttgttctc |
45421848 |
T |
|
| Q |
201 |
tgttgattcggagcag-tggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga |
299 |
Q |
| |
|
||||||| ||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
45421847 |
tgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttga |
45421748 |
T |
|
| Q |
300 |
tgt |
302 |
Q |
| |
|
||| |
|
|
| T |
45421747 |
tgt |
45421745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 13550651 - 13550350
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || | || || ||||||| |||| ||| ||||| ||||| ||||| || |||| | |||| |
|
|
| T |
13550651 |
gaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcagatacatcatttt |
13550552 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| | ||||| |||||| | || |
|
|
| T |
13550551 |
ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc |
13550452 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||| |||||||| |
|
|
| T |
13550451 |
tgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttgat |
13550352 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
13550351 |
gt |
13550350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 298
Target Start/End: Original strand, 26894320 - 26894522
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26894320 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26894419 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26894420 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26894519 |
T |
|
| Q |
296 |
ttg |
298 |
Q |
| |
|
||| |
|
|
| T |
26894520 |
ttg |
26894522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 298
Target Start/End: Original strand, 26899759 - 26899961
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
26899759 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttg |
26899858 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
26899859 |
ctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
26899958 |
T |
|
| Q |
296 |
ttg |
298 |
Q |
| |
|
||| |
|
|
| T |
26899959 |
ttg |
26899961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 43627875 - 43627725
Alignment:
| Q |
152 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtg |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||| | ||| ||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
43627875 |
tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg |
43627776 |
T |
|
| Q |
252 |
gcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
43627775 |
gcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt |
43627725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 31085452 - 31085551
Alignment:
| Q |
203 |
ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||| | |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
31085452 |
ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgt |
31085551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 33548197 - 33548098
Alignment:
| Q |
203 |
ttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33548197 |
ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgt |
33548098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13551104 - 13550882
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || | || || ||||||| |||| ||| ||||| ||||| ||||| || |||| | |||| |
|
|
| T |
13551104 |
gaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcagatacatcatttt |
13551005 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| ||||||||| ||||||| | |||| || |||| | || || || |||||||||||||||||||||||| ||| | ||||| |||||| | || |
|
|
| T |
13551004 |
ggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggcggacttgctttc |
13550905 |
T |
|
| Q |
201 |
tgttgattcggagcagtgggggg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13550904 |
tgttgattcggagcagtgggggg |
13550882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 22052911 - 22052853
Alignment:
| Q |
244 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22052911 |
aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgt |
22052853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 36804196 - 36804137
Alignment:
| Q |
244 |
aggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
36804196 |
aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc |
36804137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 36804400 - 36804352
Alignment:
| Q |
255 |
gtgggaggaggacttgttagcggagtgtagggctttacttcttgatgtc |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
36804400 |
gtgggaggaggacttgttagaggagtgtagggctttactatttgatgtc |
36804352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 26679266 - 26679225
Alignment:
| Q |
97 |
ttttggttggataggtggttaggggatgttcctttttgtgtc |
138 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
26679266 |
ttttggttggataggtgggttggtgatgttcctttttgtgtc |
26679225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 40176941 - 40176905
Alignment:
| Q |
255 |
gtgggaggaggacttgttagcggagtgtagggcttta |
291 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
40176941 |
gtgggaggaggacttggtagaggagtgtagggcttta |
40176905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 4162 - 4337
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||||| || ||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
4162 |
gaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatggagctcatacgttgtttt |
4261 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtt |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
4262 |
ggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt |
4337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 115 - 302
Target Start/End: Complemental strand, 8088 - 7901
Alignment:
| Q |
115 |
ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc |
214 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
8088 |
ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc |
7989 |
T |
|
| Q |
215 |
agtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|| |||| |||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
7988 |
agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgt |
7901 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 26205875 - 26205574
Alignment:
| Q |
1 |
gaggtgagtcgtcttaggggtagtgttggtgccggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgtttt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || | || || |||||| |||| ||| ||||| ||||| |||| ||| |||| | ||||| |
|
|
| T |
26205875 |
gaggtgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatgaggctgatacatcgtttt |
26205776 |
T |
|
| Q |
101 |
ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc |
200 |
Q |
| |
|
|||| ||||||||| || |||| | |||| || |||| | || || || |||||||||||||| |||||||||||||||| ||||| |||||| |||| |
|
|
| T |
26205775 |
ggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatc |
26205676 |
T |
|
| Q |
201 |
tgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgat |
300 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
26205675 |
tgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgat |
26205576 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
26205575 |
gt |
26205574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 302
Target Start/End: Complemental strand, 25318315 - 25318080
Alignment:
| Q |
67 |
aggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacag |
166 |
Q |
| |
|
||||| ||||| |||| ||| |||| | ||||||||| ||||||||| || |||| | |||| || |||| | || || || |||||||||||||| |
|
|
| T |
25318315 |
aggagagttggtgatgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaa |
25318216 |
T |
|
| Q |
167 |
agaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggagga |
266 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
25318215 |
agaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggagga |
25318116 |
T |
|
| Q |
267 |
cttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
25318115 |
gttgctagaggagtgtagggctttacttcttgatgt |
25318080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 302
Target Start/End: Original strand, 23347175 - 23347381
Alignment:
| Q |
96 |
gttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttg |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||| | |||| ||||||| || || | || |||||||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
23347175 |
gttttggtctgataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttg |
23347274 |
T |
|
| Q |
196 |
ttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttc |
295 |
Q |
| |
|
| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
23347275 |
ctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttc |
23347374 |
T |
|
| Q |
296 |
ttgatgt |
302 |
Q |
| |
|
||||||| |
|
|
| T |
23347375 |
ttgatgt |
23347381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 15674205 - 15674051
Alignment:
| Q |
152 |
tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg----ggttttgtggaggtggagacgtaggt |
247 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||| | ||||||||||| |||| ||||| || ||||||||||||||||||||| |
|
|
| T |
15674205 |
tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt |
15674106 |
T |
|
| Q |
248 |
tgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
15674105 |
tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgt |
15674051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 33630378 - 33630323
Alignment:
| Q |
247 |
ttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
33630378 |
ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgt |
33630323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 1683299 - 1683266
Alignment:
| Q |
269 |
tgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1683299 |
tgttagcggagtgtagggctttacttcttgatgt |
1683266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggcttta |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | || |||| ||||| |||| ||||| |
|
|
| T |
4474998 |
gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta |
4474935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 19255934 - 19255866
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
19255934 |
gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt |
19255866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 33640212 - 33640144
Alignment:
| Q |
234 |
gtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
33640212 |
gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgt |
33640144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 15490 - 15564
Alignment:
| Q |
228 |
gtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgt |
302 |
Q |
| |
|
|||||||||| | || || |||||| |||||||||||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
15490 |
gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttactatttgatgt |
15564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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