View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_2 (Length: 634)
Name: NF6890_low_2
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 244 - 621
Target Start/End: Complemental strand, 45248729 - 45248358
Alignment:
| Q |
244 |
aacaggttagaatttctcatccttcatattatctgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcacat |
343 |
Q |
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| T |
45248729 |
aacaggttagaatttctcatccttcatattatctgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcacat |
45248630 |
T |
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| Q |
344 |
gtttgtttgtgttttgtgttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgaggttttg |
443 |
Q |
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| T |
45248629 |
gtttgtttgtgttttgtgttataggtggttttctgttttaatggctgtgaattcaaatgctgat------ttatttgatcatcatgagaatgaggttttg |
45248536 |
T |
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| Q |
444 |
gggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttg |
543 |
Q |
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| T |
45248535 |
gggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttg |
45248436 |
T |
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| Q |
544 |
atgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg |
621 |
Q |
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| T |
45248435 |
atgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg |
45248358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 244 - 518
Target Start/End: Original strand, 44863757 - 44864035
Alignment:
| Q |
244 |
aacaggttagaatttctcatccttcatattatc-tgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcaca |
342 |
Q |
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| T |
44863757 |
aacaggtttgaatttctcatccttcatatgatcctgttttatcattataaaggttttatgatttatacatttcaaatatgaacgcatgta--catgcaca |
44863854 |
T |
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| Q |
343 |
tgtttgtttgtgttttgt-----gttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgag |
437 |
Q |
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| T |
44863855 |
tgtttgtttgtgttttgtgttgtgttataggtggttttctgttactatagctatgaatttaaatgctgatgctgttttatttgatcatcatgagaatggg |
44863954 |
T |
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| Q |
438 |
gttttggggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttgga |
518 |
Q |
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| T |
44863955 |
gttttggggtttaactctataataaggtttaatgttaacgttggtctctcttgttctcaaaccctaatctgtgatgttgga |
44864035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 45248917 - 45248752
Alignment:
| Q |
82 |
attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacaaaccaa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45248917 |
attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacgaaccaa |
45248818 |
T |
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| Q |
182 |
gattttctcaacaacaaaagaagtaaccattcttcatacaacccaactcaactcaaacaaacaaca |
247 |
Q |
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| T |
45248817 |
gattttctcaacaacaaaagaagtaaccattcttcaaacaacccaactcaactcaaacaaacaaca |
45248752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 621
Target Start/End: Original strand, 44864078 - 44864132
Alignment:
| Q |
567 |
gggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg |
621 |
Q |
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| T |
44864078 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtg |
44864132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 535 - 621
Target Start/End: Complemental strand, 28754809 - 28754723
Alignment:
| Q |
535 |
gaatgtttgatgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg |
621 |
Q |
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|||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
28754809 |
gaatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtg |
28754723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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