View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6890_low_20 (Length: 287)
Name: NF6890_low_20
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 47292276 - 47292527
Alignment:
| Q |
18 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292276 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
47292375 |
T |
|
| Q |
118 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttcca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47292376 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttcca |
47292475 |
T |
|
| Q |
218 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292476 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgt |
47292527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 47298883 - 47299134
Alignment:
| Q |
18 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
117 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
47298883 |
catacaccccttcaccccatccgaaattcacttctgagagcctagcacgagtcaaatctgaaataatacaagaccttacagttgtaaataaacaccgttc |
47298982 |
T |
|
| Q |
118 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
47298983 |
cttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttcca |
47299082 |
T |
|
| Q |
218 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgt |
269 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47299083 |
caaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgt |
47299134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 47267926 - 47267721
Alignment:
| Q |
64 |
acgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagta |
163 |
Q |
| |
|
|||||| | |||||| | |||||||||||||| |||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||| |
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| T |
47267926 |
acgagttacatctgaaacaacacaagaccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgta |
47267827 |
T |
|
| Q |
164 |
acttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
47267826 |
acttcagcttttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaat |
47267727 |
T |
|
| Q |
264 |
taccgt |
269 |
Q |
| |
|
|||||| |
|
|
| T |
47267726 |
taccgt |
47267721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 47279344 - 47279095
Alignment:
| Q |
18 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
117 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||| | | ||||||||||||| ||||| | ||||||||| |||| |||||||||||||| ||||| |
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|
| T |
47279344 |
catacaccgcctcaccccatccaaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacaagatcttattgttgtaaataaacatcgttc |
47279245 |
T |
|
| Q |
118 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttcca |
217 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||| ||||| | || ||||||||| |
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|
| T |
47279244 |
cttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttcca |
47279145 |
T |
|
| Q |
218 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttacc |
267 |
Q |
| |
|
|||||||||||||| |||||||| || || ||| |||||||||||||||| |
|
|
| T |
47279144 |
caaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttacc |
47279095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 47283937 - 47283688
Alignment:
| Q |
18 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
117 |
Q |
| |
|
|||||||| | |||||||| || ||||||||||||| | | ||||||||||||| ||||| | |||||| || ||||| |||||||||||||| ||||| |
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|
| T |
47283937 |
catacaccgcctcaccccatccgaaattcacttctgcgtacttagcacgagtcaagtctgatacaacacacgatcttactgttgtaaataaacatcgttc |
47283838 |
T |
|
| Q |
118 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttcca |
217 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||||||||| | || || |||||| |
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|
| T |
47283837 |
cttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttcca |
47283738 |
T |
|
| Q |
218 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttacc |
267 |
Q |
| |
|
|||||||||||||| |||||||| || || ||| |||||||||||||||| |
|
|
| T |
47283737 |
caaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttacc |
47283688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 47243058 - 47242840
Alignment:
| Q |
28 |
ttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataacc |
127 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||||||| |||| || | | ||||| ||| |||||||||||||||| ||||||||||||||| |
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|
| T |
47243058 |
ttcaccccatccgaaattcacttctgagaaattagcacgagtccaatccgacactatacaagttcttccagttgtaaataaacatcgttccttaataacc |
47242959 |
T |
|
| Q |
128 |
ataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttcc |
227 |
Q |
| |
|
|||| ||| || | |||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | |
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|
| T |
47242958 |
ataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcct |
47242859 |
T |
|
| Q |
228 |
ctgcagtggtgacggccgc |
246 |
Q |
| |
|
||| |||||||| ||||| |
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|
| T |
47242858 |
ttgcggtggtgacagccgc |
47242840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 47257195 - 47256949
Alignment:
| Q |
18 |
catacaccccttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttc |
117 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||| | ||||||||||| ||||||| | | ||| | ||| | ||||||||||||| ||||| |
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|
| T |
47257195 |
catacacagcttcaccccatccgaaattcacttctgagaacttagcacgagtccaatctgacaccatacatgttcttccctttgtaaataaacatcgttc |
47257096 |
T |
|
| Q |
118 |
cttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttcca |
217 |
Q |
| |
|
|||||||||||||| ||| |||| || |||||||| | ||| ||||||| ||||||| |||||||| |||||||||||||||| | ||| | |||||| |
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|
| T |
47257095 |
cttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttcca |
47256996 |
T |
|
| Q |
218 |
caaagcttccctgcagtggtgacggccgctgggtaagcaaaacagtt |
264 |
Q |
| |
|
||||||| | ||| |||||||| ||||| | | |||||| |||||| |
|
|
| T |
47256995 |
caaagctcctttgcggtggtgactgccgccgagaaagcaatacagtt |
47256949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 32731725 - 32731484
Alignment:
| Q |
28 |
ttcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaataacc |
127 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||||| ||||||| | | ||||| ||| | |||||||||||||| ||||||||||||||| |
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|
| T |
32731725 |
ttcaccccatccgaaattcacttctgataaattagcacgagtccaatctgacaccatacaagttcttccggttgtaaataaacatcgttccttaataacc |
32731626 |
T |
|
| Q |
128 |
ataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataagcaaatggatttccacaaagcttcc |
227 |
Q |
| |
|
||| ||| || | |||||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||| | ||| | ||||||||||||| | |
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|
| T |
32731625 |
atacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcct |
32731526 |
T |
|
| Q |
228 |
ctgcagtggtgacggccgctgggtaagcaaaacagttaccgt |
269 |
Q |
| |
|
||| |||||||| ||||| | | |||||| ||| ||||||| |
|
|
| T |
32731525 |
ttgcggtggtgacagccgccgagaaagcaatacaattaccgt |
32731484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 20519733 - 20519638
Alignment:
| Q |
29 |
tcaccccaaccaaaattcacttctgagagcctagcacgagtcaaatctgagataacacaagaccttacagttgtaaataaacaccgttccttaata |
124 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||||||| |||||| |||||||||||| |
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|
| T |
20519733 |
tcaccccatccaaaattcacttctctgaacttagcacgtgtcaaatctgacataacacaacaacttacagttgtaagtaaacatcgttccttaata |
20519638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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