View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_25 (Length: 252)
Name: NF6890_low_25
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18270177 - 18269935
Alignment:
| Q |
1 |
actacactctcctatgccgtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttg |
100 |
Q |
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| T |
18270177 |
actacactctcctatgccgtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttg |
18270078 |
T |
|
| Q |
101 |
ctgcatagctctgttgcagttttcttattctccacttcctcaactacttttatcgcttctagccaccatgattcactgtagttgtcttcaacagtgtctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18270077 |
ctgcatagctctgttgcagttttcttattctccacttcctcaactacttttatcgcttctagccaccatgaatcactgtagttgtcttcaacagtgtctt |
18269978 |
T |
|
| Q |
201 |
catattgcagaaaattgggcttgttatcattaggttgatgtcc |
243 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18269977 |
catattgcagaaaattgggcttgttatcattcggttgatgtcc |
18269935 |
T |
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