View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_3 (Length: 622)
Name: NF6890_low_3
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 6 - 592
Target Start/End: Original strand, 50214358 - 50214944
Alignment:
| Q |
6 |
caatgagatggacatcaagtctagtaacaatttacataagggctagttctatatgctttgctacacatcgtatatcaatttcagagcattcaatttcaat |
105 |
Q |
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|||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50214358 |
caattagatagacagcaagtctagtaacaatttacataagggctagttcaatatgctttgctacacatcgtatatcaatttcagagcattcaatttcaat |
50214457 |
T |
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| Q |
106 |
tctctcttctaaaactccattgttgcaacaagtattatatcagagatatatattattcatggtcacttaatataacaaacccgcacttcaattttacctt |
205 |
Q |
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| T |
50214458 |
tctctcttctaaaactccattgttgcaacaagtattatatcagagatatatattattcatggtcacttaatataacaaacccgcacttcaattttacctt |
50214557 |
T |
|
| Q |
206 |
tatttctgcactaggtccaagccattgtccccgaagaccatttggtcctaaaaatgagtgtcttgacaaggtctccttatttggtaggggtacattcaga |
305 |
Q |
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| T |
50214558 |
tatttctgcactaggtccaagccattgtccccgaagaccatttggtcctaaaaatgagtgtcttgacaaggtctccttatttggtaggggtacattcaga |
50214657 |
T |
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| Q |
306 |
gatctgcaagtccagagaacagttatcatatttcctccttcaacacagcagcatgatttttcttttgaaatatatcaccaatgttcaagacagaacctcc |
405 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50214658 |
gatctgcaagtccagagaaaaattatcatatttcctccttcaacacagcagcatgatttttcttttgaaatatatcaccgatgttcaagacagaacctcc |
50214757 |
T |
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| Q |
406 |
tcaaatcacacggataataggaacatatatgctaattaaattgggctgaatgaaaatggcattaggagtggaaatagtatataagcaacnnnnnnngtat |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50214758 |
tcaaatcacacggataataggaacatatatgctaattaaattgggctgaatgaaaatggcattaggagtggaaatagtatataagcaacaaaaaaagtat |
50214857 |
T |
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| Q |
506 |
aagtataacattagaattagatccagtaaggtgtacatgtagtaaatgcaagaaatctgttaaatgaaacacttctattatttactc |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50214858 |
aagtataacattagaattagatccagtaaggtgtacatgtagtaaatgcaagaaatctgttaaatgaaacacttctattctttactc |
50214944 |
T |
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