View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_31 (Length: 228)
Name: NF6890_low_31
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13287557 - 13287784
Alignment:
| Q |
1 |
gattggataagaatgtatatacttgatatcaatcatcaactatacaagcaccatgcatataccatgctactgtttgcacttaattttgttctttttgagc |
100 |
Q |
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| T |
13287557 |
gattggataagaatgtatatacttgatatcaatcatcaactatacaagcaccatgcatataccatgctactgtttgcacttaattttgttctttttgagc |
13287656 |
T |
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| Q |
101 |
agcaattttatgaaccgttgctgaggtggatataaatcagctagtcaagtagccatgatattattatgtatatgaagattaatggatttgatttcattgg |
200 |
Q |
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| T |
13287657 |
agcaattttatgaaccgttgctgaggtggatataaatcagctagtcaagtagccatggtattattatgtatatgaagattaatggatttgatttcattgg |
13287756 |
T |
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| Q |
201 |
tggaaattgctatattgtttttgttcta |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13287757 |
tggaaattgctatattgtttttgttcta |
13287784 |
T |
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