View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_32 (Length: 228)
Name: NF6890_low_32
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_32 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 32094563 - 32094382
Alignment:
| Q |
47 |
gtttctcatatgtttcctctataagatataaacttattcgaggtgtgtcatacaataaatgagaatacttctttcaatcgtgatttgaacttgatatgcc |
146 |
Q |
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| T |
32094563 |
gtttctcatatgtttcctctattagatataaacctattcgaggtgtgtcatacaataaatgagaatacttctttcaaccgtgatttgaacttgatctgcc |
32094464 |
T |
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| Q |
147 |
acgttatagtgttttgtcaccatatctttatttatacttataataagtactttacacaatccacttaggttggtctgatatt |
228 |
Q |
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| T |
32094463 |
acgctatagtgttttgtcaccatatctttatttatacttataataagtactttacacaatccacttaggttggcctgatatt |
32094382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32094616 - 32094581
Alignment:
| Q |
1 |
tttaaatatagtagattttaaacgtgttataaagtg |
36 |
Q |
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| T |
32094616 |
tttaaatatagtagattttaaatgtgttataaagtg |
32094581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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