View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_low_9 (Length: 450)
Name: NF6890_low_9
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 38937331 - 38936906
Alignment:
| Q |
12 |
caacaacctctctggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgc |
111 |
Q |
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| T |
38937331 |
caacaacctctctggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgc |
38937232 |
T |
|
| Q |
112 |
acaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttga |
211 |
Q |
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| T |
38937231 |
acaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttga |
38937132 |
T |
|
| Q |
212 |
ctcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagctt |
311 |
Q |
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| T |
38937131 |
ctcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagctt |
38937032 |
T |
|
| Q |
312 |
ttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttggg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38937031 |
ttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgatgataaccagttcaatggaaatatcacagaagcatttggg |
38936932 |
T |
|
| Q |
412 |
attcatccaaatcttagtttcatctc |
437 |
Q |
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| T |
38936931 |
attcatccaaatcttagtttcatctc |
38936906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 39305621 - 39306046
Alignment:
| Q |
12 |
caacaacctctctggtaacattccagtggatattggaaacttaacctcactgcaaacttttgatgtcaacaataataacttggatggagaattgccacgc |
111 |
Q |
| |
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||||||||||||||| || |||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||| | |
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| T |
39305621 |
caacaacctctctggaaatattccaatggatattggaaacttaacttcactgcaaatttttgatgtcgacaataataacttggaaggagaattgccagac |
39305720 |
T |
|
| Q |
112 |
acaatttctcatctaacttccttaacttatttttccgtgttcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttga |
211 |
Q |
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|||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||| |
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| T |
39305721 |
acaattgctcatctaactgccttaacttctttttctgtgttcaccaataacttctcaggaagcatttccagagattttggaaagaacagtccttctttga |
39305820 |
T |
|
| Q |
212 |
ctcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagctt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
39305821 |
ctcatgtctacttttcaaacaatagtttctcaggagaacttccttctgaattatgcagtggccacaatctagttgttttggccgtaaataacaacagctt |
39305920 |
T |
|
| Q |
312 |
ttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttggg |
411 |
Q |
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|||||| |||||||| || || ||||||||||||||||| || | |||| |||||||||| |||||| |||||| |||||| ||||||||| |||||||| |
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| T |
39305921 |
ttcaggatcattgccaaactccttgagaaattgttcatccttaacaagagttaggcttgatgataacaagttcagtggaaacatcacagaatcatttggg |
39306020 |
T |
|
| Q |
412 |
attcatccaaatcttagtttcatctc |
437 |
Q |
| |
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|||||| ||||||||| ||||||||| |
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|
| T |
39306021 |
attcatacaaatcttattttcatctc |
39306046 |
T |
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