View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6891_low_2 (Length: 274)
Name: NF6891_low_2
Description: NF6891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6891_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 45342735 - 45342496
Alignment:
| Q |
11 |
attcccaatgcatatttgagatgcatggagttagaagacattgctgaatttgcagacgatgatgagaaatattattatagtgttgtattcgtatgatgaa |
110 |
Q |
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| T |
45342735 |
attcccaatgcatatttgagatg----gagttagaagacattgctgaatttgcagacgatgatgacaaatattat---agtgttgtattcgtatgatgaa |
45342643 |
T |
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| Q |
111 |
gtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
210 |
Q |
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| T |
45342642 |
gtgttattttgaaaattaaaaagatgctctgtt-----ggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaat |
45342548 |
T |
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| Q |
211 |
accttaaaacttttggcatatttgttcacgaaatatggtatcacattcacagg |
263 |
Q |
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| T |
45342547 |
acctt-aaacttttgacatatttgttcacgaaatatggtatcacattcacagg |
45342496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 45347089 - 45346970
Alignment:
| Q |
143 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaa |
242 |
Q |
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| T |
45347089 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaatacctt-aaacttttgacatatttgttcacgaa |
45346991 |
T |
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| Q |
243 |
atatggtatcacattcacagg |
263 |
Q |
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| T |
45346990 |
atatggtatcacattcacagg |
45346970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 45370719 - 45370669
Alignment:
| Q |
35 |
atggagttagaagacattgctgaatttgcagacgatgatgagaaatattat |
85 |
Q |
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| T |
45370719 |
atggagttagaagacattgttgaatttgcagatgatgatgagaaatgttat |
45370669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 48855813 - 48855852
Alignment:
| Q |
41 |
ttagaagacattgctgaatttgcagacgatgatgagaaat |
80 |
Q |
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| T |
48855813 |
ttagaagatattgctgaatttgcagatgatgatgagaaat |
48855852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 48865371 - 48865518
Alignment:
| Q |
91 |
tgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataat |
190 |
Q |
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| T |
48865371 |
tgttgcattcttatgatgaagtgttatttccaagattaaaaagatgctccattgaattgg---tgtgatagagttcatttatacaatattgaaaaacaat |
48865467 |
T |
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| Q |
191 |
tcatcttgccttcacctaataccttaaaacttttggcat-atttgttcacgaaat |
244 |
Q |
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| T |
48865468 |
tta---tgtcttcacataatagctt-aaacttttggcataatttgttcacaaaat |
48865518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 45349616 - 45349561
Alignment:
| Q |
112 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
172 |
Q |
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| T |
45349616 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45349561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 45359095 - 45359040
Alignment:
| Q |
112 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
172 |
Q |
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| T |
45359095 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45359040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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