View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6892_high_1 (Length: 672)

Name: NF6892_high_1
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6892_high_1
NF6892_high_1
[»] chr8 (6 HSPs)
chr8 (9-672)||(15349473-15350135)
chr8 (598-668)||(4030191-4030261)
chr8 (618-668)||(12200921-12200971)
chr8 (618-668)||(12445349-12445399)
chr8 (635-668)||(12195906-12195939)
chr8 (635-668)||(12440334-12440367)
[»] chr4 (35 HSPs)
chr4 (399-672)||(48886830-48887101)
chr4 (399-672)||(48871144-48871415)
chr4 (399-672)||(48876448-48876719)
chr4 (215-402)||(48871450-48871650)
chr4 (215-402)||(48876754-48876954)
chr4 (215-402)||(48887136-48887336)
chr4 (54-177)||(48889058-48889181)
chr4 (511-668)||(7237065-7237222)
chr4 (598-668)||(45365623-45365693)
chr4 (598-667)||(45384293-45384362)
chr4 (616-668)||(7908884-7908936)
chr4 (507-668)||(37826304-37826466)
chr4 (278-339)||(37826067-37826128)
chr4 (598-667)||(48155826-48155895)
chr4 (512-667)||(48863848-48863999)
chr4 (616-668)||(7905160-7905212)
chr4 (616-672)||(45371492-45371548)
chr4 (507-574)||(48853347-48853412)
chr4 (538-584)||(50669757-50669801)
chr4 (598-668)||(7801225-7801295)
chr4 (598-668)||(7823557-7823627)
chr4 (249-327)||(48864921-48864998)
chr4 (273-311)||(49040266-49040304)
chr4 (627-668)||(7814065-7814106)
chr4 (595-668)||(48147113-48147186)
chr4 (634-667)||(48734859-48734892)
chr4 (616-668)||(7771977-7772029)
chr4 (511-551)||(7772095-7772135)
chr4 (616-668)||(7790662-7790714)
chr4 (511-551)||(7790780-7790820)
chr4 (275-323)||(7905441-7905489)
chr4 (339-399)||(49038054-49038113)
chr4 (632-672)||(49043605-49043645)
chr4 (640-672)||(49048000-49048032)
chr4 (640-672)||(50669666-50669698)
[»] chr5 (6 HSPs)
chr5 (507-669)||(29688713-29688876)
chr5 (61-133)||(9122333-9122405)
chr5 (553-665)||(9120354-9120472)
chr5 (258-322)||(9120676-9120740)
chr5 (507-602)||(29696896-29696989)
chr5 (398-470)||(29688873-29688946)
[»] scaffold0536 (1 HSPs)
scaffold0536 (69-165)||(8398-8494)
[»] chr1 (3 HSPs)
chr1 (275-332)||(24367996-24368053)
chr1 (598-672)||(24340995-24341069)
chr1 (598-672)||(24353360-24353434)
[»] chr3 (6 HSPs)
chr3 (404-471)||(11005184-11005251)
chr3 (404-470)||(11023754-11023820)
chr3 (634-669)||(11014933-11014968)
chr3 (618-669)||(47451323-47451374)
chr3 (250-295)||(11004985-11005030)
chr3 (634-671)||(11023945-11023982)
[»] chr2 (2 HSPs)
chr2 (598-660)||(29351018-29351080)
chr2 (507-551)||(29351122-29351166)
[»] chr7 (1 HSPs)
chr7 (639-667)||(30119715-30119743)


Alignment Details
Target: chr8 (Bit Score: 584; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Complemental strand, 15350135 - 15349473
Alignment:
Q  9 acatcatcaagtggtaaaacgcatatattcagtattcc-aatgaacagagtacacctccaagttggttatagctctcaagttttgtctaaatcgtattag 107  Q
    |||| ||||| || |||||  ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15350135 acataatcaactgttaaaatacatatattcagtactcccaatgaacagagtacacctccaagttggttatagctctcaagttttgtctaaatcgtattag 15350036  T
Q  108 agatttaaagcttgagaaatttggtaagaaaagaaatctcatcttagatttgtctaaaatcaccacttagccagcttcttgttcgttcaaatacatatgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||    
T  15350035 agatttaaagcttgagaaatttggtaagaaaagaaatctcatcttagatttgtctaaaatcaccacttag---gcttcttgttctttcaaatacatatgt 15349939  T
Q  208 g-cgatgatcaaatttttaaagaagcgcctcgagtcaaggtggtgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaactaatttacca 306  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  15349938 ggcgatgatcaaatttttaaagaagcgcctcgagtcaaagtggtgtaattgtgattttgatcttgtttaatatgcaaaaactcatcaaactaatttacca 15349839  T
Q  307 tataaaacgatttcaaacagcgaccaaaacatatccaattacacattcacaaataactttgaatcacacagacaattaaagttgtcaacattttcataac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15349838 tataaaacgatttcaaacagcgaccaaaacatatccaattacacattcacaaataacgttgaatcacacagacaattaaagttgtcaacattttcataac 15349739  T
Q  407 atattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcatacgatacg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349738 atattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcatacgatacg 15349639  T
Q  507 accctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttcattcttgttt 606  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15349638 accctacaaatgcagtcatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctcattcttgttt 15349539  T
Q  607 gcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349538 gcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 15349473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 598 - 668
Target Start/End: Original strand, 4030191 - 4030261
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||||||| ||| || |||||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  4030191 ttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactctgtgtacat 4030261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 668
Target Start/End: Complemental strand, 12200971 - 12200921
Alignment:
Q  618 ttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  12200971 ttaaacctgctcacgatcaccagggagtgaaagcagagactctgtatacat 12200921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 668
Target Start/End: Complemental strand, 12445399 - 12445349
Alignment:
Q  618 ttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  12445399 ttaaacctgctcacgatcaccagggagtgaaagcagagactctgtatacat 12445349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 12195939 - 12195906
Alignment:
Q  635 caccagggagtgaaagcagagactctgtatacat 668  Q
    ||||||||||||||||||||||||||||||||||    
T  12195939 caccagggagtgaaagcagagactctgtatacat 12195906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 12440367 - 12440334
Alignment:
Q  635 caccagggagtgaaagcagagactctgtatacat 668  Q
    ||||||||||||||||||||||||||||||||||    
T  12440367 caccagggagtgaaagcagagactctgtatacat 12440334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 399 - 672
Target Start/End: Complemental strand, 48887101 - 48886830
Alignment:
Q  399 ttcataacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcat 498  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||| |||||||||||||  ||||| || ||||| ||||| || |||||||||    
T  48887101 ttcataacatattaaataagctcatgcggtatactgaatcatattacaaatgcaatcaaacacatgataccctcatatgcataaatggaatcaaagtcat 48887002  T
Q  499 acgatacgaccctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttca- 597  Q
    |  |     |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | ||||| |||     
T  48887001 atta-----ccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcat 48886907  T
Q  598 --ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
      |||||||||| |||  | |||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  48886906 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagcc 48886830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 399 - 672
Target Start/End: Complemental strand, 48871415 - 48871144
Alignment:
Q  399 ttcataacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcat 498  Q
    |||||||||||||  |||||| |||| || ||||||||||||| ||||||| ||||||||||| |||||||| || ||||| ||||| || |||||||||    
T  48871415 ttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcaaaaatggaatcaaagtcat 48871316  T
Q  499 acgatacgaccctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttca- 597  Q
    |  |     |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | ||||| |||     
T  48871315 atta-----ccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcat 48871221  T
Q  598 --ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
      |||||||||| |||  | |||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  48871220 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagcc 48871144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 399 - 672
Target Start/End: Complemental strand, 48876719 - 48876448
Alignment:
Q  399 ttcataacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattacccacaaatgcagaaatgcaagcaaagtcat 498  Q
    |||||||||||||  |||||| |||| || ||||||||||||| ||||||| ||||||||||| |||||||| || ||||| ||||| || |||||||||    
T  48876719 ttcataacatattaaataagcacatgtggtatactgaatcatattacaaatgcaatcaaacacgtattaccctcatatgcaaaaatggaatcaaagtcat 48876620  T
Q  499 acgatacgaccctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttca- 597  Q
    |  |     |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | ||||| |||     
T  48876619 atta-----ccctacaaatgcagacacccaacagtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcat 48876525  T
Q  598 --ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
      |||||||||| |||  | |||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  48876524 tcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgtatagatagcc 48876448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 48871650 - 48871450
Alignment:
Q  215 tcaaatttttaaagaagcgcctcgagtcaaggtggtgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaactaatttaccatataaaac 314  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||    
T  48871650 tcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaac 48871551  T
Q  315 gatttcaaacagcgaccaaaacat-------------atccaattacacattcacaaataactttgaatcacacagacaattaaagttgtcaacattttc 401  Q
     ||||||| ||| |||||||||||             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48871550 aatttcaagcagtgaccaaaacatacattagagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttc 48871451  T
Q  402 a 402  Q
    |    
T  48871450 a 48871450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 48876954 - 48876754
Alignment:
Q  215 tcaaatttttaaagaagcgcctcgagtcaaggtggtgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaactaatttaccatataaaac 314  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||    
T  48876954 tcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaac 48876855  T
Q  315 gatttcaaacagcgaccaaaacat-------------atccaattacacattcacaaataactttgaatcacacagacaattaaagttgtcaacattttc 401  Q
     ||||||| ||| |||||||||||             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48876854 aatttcaagcagtgaccaaaacatacattagagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttc 48876755  T
Q  402 a 402  Q
    |    
T  48876754 a 48876754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 48887336 - 48887136
Alignment:
Q  215 tcaaatttttaaagaagcgcctcgagtcaaggtggtgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaactaatttaccatataaaac 314  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||  |||||    
T  48887336 tcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaacatgctaaaattcatcaaactaatttaccatgaaaaac 48887237  T
Q  315 gatttcaaacagcgaccaaaacat-------------atccaattacacattcacaaataactttgaatcacacagacaattaaagttgtcaacattttc 401  Q
     ||||||| ||| |||||||||||             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48887236 aatttcaagcagtgaccaaaacatgcattagagctcaatccaattacacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttc 48887137  T
Q  402 a 402  Q
    |    
T  48887136 a 48887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 48889181 - 48889058
Alignment:
Q  54 agagtacacctccaagttggttatagctctcaagttttgtctaaatcgtattagagatttaaagcttgagaaatttggtaagaaaagaaatctcatctta 153  Q
    |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| | || | ||||||||||||| ||||||||||||||    
T  48889181 agagtacacctccaagttggttatagctctcaagttttgtcttaaccttattagagatttaaagatagaaagatttggtaagaaaggaaatctcatctta 48889082  T
Q  154 gatttgtctaaaatcaccacttag 177  Q
    |||||||||||||||| |||||||    
T  48889081 gatttgtctaaaatcatcacttag 48889058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 668
Target Start/End: Original strand, 7237065 - 7237222
Alignment:
Q  511 tacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttcatt---cttgtttg 607  Q
    |||||||||| ||| |||| ||||||||| |||||||||||  |||||||| || ||||   ||||||||||||  | | ||| |||||   ||||||||    
T  7237065 tacaaatgcaaccaaccaagagtacataaaacaatataatt--ataaatataaagaaaacaatgaaggagaatatttcacaacatcattgttcttgtttg 7237162  T
Q  608 cgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
     ||| || | |||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  7237163 tgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtatacat 7237222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 668
Target Start/End: Original strand, 45365623 - 45365693
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||||||| ||| || |||||||| |||||||| |||||||| ||||| |||| |||||||||||||||    
T  45365623 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacat 45365693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 667
Target Start/End: Original strand, 45384293 - 45384362
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtataca 667  Q
    |||||||||| ||| || |||||||| |||||||| |||||||  |||||||| ||||||||||||||||    
T  45384293 ttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtataca 45384362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 7908936 - 7908884
Alignment:
Q  616 tcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||| | |||||||| |||||||||||||||||||||||||| ||||||||    
T  7908936 tcttaaacttgctcattgtcaccagggagtgaaagcagagactcggtatacat 7908884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 668
Target Start/End: Original strand, 37826304 - 37826466
Alignment:
Q  507 accctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttca---ttcttg 603  Q
    ||||||||||| ||| || |||| ||| |||||||||||||||  ||  ||||||||| |||||||||||||||||||  |  |||| |||   ||||||    
T  37826304 accctacaaatccagacacccaagagttcataatacaatataa--ttgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattcttcttg 37826401  T
Q  604 tttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    ||||  || || |||||| | |||||    ||| |||||| ||||||||||||||| ||||||||    
T  37826402 tttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagcagagactccgtatacat 37826466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 37826067 - 37826128
Alignment:
Q  278 atgcaaaaactcatcaaactaatttaccatataaaacgatttcaaacagcgaccaaaacata 339  Q
    ||||| || ||||||||| |||||||||||||||||| |||||| |||| ||| ||||||||    
T  37826067 atgcataacctcatcaaattaatttaccatataaaaccatttcagacagtgacaaaaacata 37826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 667
Target Start/End: Original strand, 48155826 - 48155895
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtataca 667  Q
    |||||||||| |  ||| ||||| || ||| |||| ||||||||||||||||||| ||||||||||||||    
T  48155826 ttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtataca 48155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 667
Target Start/End: Complemental strand, 48863999 - 48863848
Alignment:
Q  512 acaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttcattcttgtttgcgtc 611  Q
    ||||||||||||| | ||  || ||||| |||||||||||  ||||||||| | ||||||||  |||||||||  |  |||| ||||  || || | |||    
T  48863999 acaaatgcagccaccgaatggttcataaaacaatataatt--ataaatatccagaaaatggtccaggagaatattt--aaacctcatgattcttggtgtc 48863904  T
Q  612 gtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtataca 667  Q
     || |||||||| |||||| | |||  |||||||||||||||||||||||||||||    
T  48863903 atcttcttaagcttgctcactgtcattagggagtgaaagcagagactctgtataca 48863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 7905212 - 7905160
Alignment:
Q  616 tcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||| | ||||| |||||||| |||||||||||||||||||| ||||||||    
T  7905212 tcttaaacttgctcgttatcaccggggagtgaaagcagagactccgtatacat 7905160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 672
Target Start/End: Original strand, 45371492 - 45371548
Alignment:
Q  616 tcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
    |||||||| || ||||| || | || |||||||||||||||||||||||||||||||    
T  45371492 tcttaagcttgatcattgtcgctagagagtgaaagcagagactctgtatacatagcc 45371548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 48853412 - 48853347
Alignment:
Q  507 accctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtg 574  Q
    |||||| ||||||||| |||||| ||||||||||||||||||   ||||||  |||||||||||||||    
T  48853412 accctaaaaatgcagctatccaaaagtacataatacaatata--gttataataatcaataaaatggtg 48853347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 50669801 - 50669757
Alignment:
Q  538 aatacaatataattttataaatatcaataaaatggtgaaggagaata 584  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||    
T  50669801 aatacaatataatt--ataaatataaataaaatggtgaaggagaata 50669757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 668
Target Start/End: Complemental strand, 7801295 - 7801225
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||||||  ||| || |||||| | | |||||| || ||||||||||||||||||||||| ||||||||    
T  7801295 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacat 7801225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 668
Target Start/End: Complemental strand, 7823627 - 7823557
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||||||  ||| || |||||| | | |||||| || ||||||||||||||||||||||| ||||||||    
T  7823627 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacat 7823557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 48864998 - 48864921
Alignment:
Q  249 gtgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaactaatttaccatataaaacgatttcaaacagc 327  Q
    ||||||||||||||||||||| | | |||||||||| | ||| |||| ||| |||| ||||||||| ||||||| ||||    
T  48864998 gtgtaattgtgattttgatcttgatcaacatgcaaacattcagcaaa-taaattacaatataaaacaatttcaagcagc 48864921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 49040266 - 49040304
Alignment:
Q  273 ttaacatgcaaaaactcatcaaactaatttaccatataa 311  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  49040266 ttaacatgcataaactcatcagactaatttaccatataa 49040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 627 - 668
Target Start/End: Complemental strand, 7814106 - 7814065
Alignment:
Q  627 ctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||| || ||||||||||||||||||||||| ||||||||    
T  7814106 ctcattgtccccagggagtgaaagcagagactcggtatacat 7814065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 48147113 - 48147186
Alignment:
Q  595 tcattcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    ||||||||||||| ||| || ||||| |   || |||| |||| ||||||||||||||||||||| ||||||||    
T  48147113 tcattcttgtttgtgtcatcttcttagggtagcacattgtcactagggagtgaaagcagagactcagtatacat 48147186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 667
Target Start/End: Original strand, 48734859 - 48734892
Alignment:
Q  634 tcaccagggagtgaaagcagagactctgtataca 667  Q
    ||||| ||||||||||||||||||||||||||||    
T  48734859 tcaccggggagtgaaagcagagactctgtataca 48734892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 7772029 - 7771977
Alignment:
Q  616 tcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||| | |||||||| |||||| | |||||||||||||| |||||||||||    
T  7772029 tcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacat 7771977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 551
Target Start/End: Complemental strand, 7772135 - 7772095
Alignment:
Q  511 tacaaatgcagccatccaacagtacataatacaatataatt 551  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  7772135 tacaaatgcagccacccaagagtacataaaacaatataatt 7772095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 7790714 - 7790662
Alignment:
Q  616 tcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacat 668  Q
    |||||| | |||||||| |||||| | |||||||||||||| |||||||||||    
T  7790714 tcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacat 7790662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 551
Target Start/End: Complemental strand, 7790820 - 7790780
Alignment:
Q  511 tacaaatgcagccatccaacagtacataatacaatataatt 551  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  7790820 tacaaatgcagccacccaagagtacataaaacaatataatt 7790780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 7905489 - 7905441
Alignment:
Q  275 aacatgcaaaaactcatcaaactaatttaccatataaaacgatttcaaa 323  Q
    |||||||| |||| ||||| | |||||||||||||||||| ||||||||    
T  7905489 aacatgcataaacccatcagattaatttaccatataaaactatttcaaa 7905441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 49038054 - 49038113
Alignment:
Q  339 atccaattacacattcacaaataactttgaatcacacagacaattaaagttgtcaacattt 399  Q
    |||||||||||||| || ||||||| |  | ||||||| ||||||||||||||||||||||    
T  49038054 atccaattacacatgcataaataacatata-tcacacaaacaattaaagttgtcaacattt 49038113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 632 - 672
Target Start/End: Original strand, 49043605 - 49043645
Alignment:
Q  632 tatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
    ||||||| ||||||||||||| |||||||||||| ||||||    
T  49043605 tatcaccggggagtgaaagcaaagactctgtatagatagcc 49043645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 640 - 672
Target Start/End: Original strand, 49048000 - 49048032
Alignment:
Q  640 gggagtgaaagcagagactctgtatacatagcc 672  Q
    ||||||||||||| |||||||||||||||||||    
T  49048000 gggagtgaaagcaaagactctgtatacatagcc 49048032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 640 - 672
Target Start/End: Complemental strand, 50669698 - 50669666
Alignment:
Q  640 gggagtgaaagcagagactctgtatacatagcc 672  Q
    ||||||||||| |||||||||||||||||||||    
T  50669698 gggagtgaaagtagagactctgtatacatagcc 50669666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 507 - 669
Target Start/End: Complemental strand, 29688876 - 29688713
Alignment:
Q  507 accctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttcattcttgttt 606  Q
    ||||||| ||||||||||  ||| |||||||||||| ||||||||  ||||| ||||  ||||||||||||| |||||  ||||||| |||||||||| |    
T  29688876 accctacgaatgcagccactcaagagtacataatactatataatt--ataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtct 29688779  T
Q  607 gcgtcgtcctcttaagcctgctca---ttatcaccagggagtgaaagcagagactctgtatacata 669  Q
    ||||| || ||||||||||| |||   | | ||||||| |||||||||||||| ||||||||||||    
T  29688778 gcgtcatcttcttaagcctgatcactgtcaccaccaggaagtgaaagcagagattctgtatacata 29688713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 9122405 - 9122333
Alignment:
Q  61 acctccaagttggttatagctctcaagttttgtctaaatcgtattagagatttaaagcttgagaaatttggta 133  Q
    |||| ||||||||||||||| |||| |||| ||||||| | |||||||||||||||||||| |||||||||||    
T  9122405 accttcaagttggttatagccctcatgtttagtctaaaccatattagagatttaaagcttgcgaaatttggta 9122333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 665
Target Start/End: Complemental strand, 9120472 - 9120354
Alignment:
Q  553 tataaatatcaataaaatggtgaaggagaataactgaaaacttcattctt------gtttgcgtcgtcctcttaagcctgctcattatcaccagggagtg 646  Q
    |||||| ||||| |||||||||||||||||||  | ||||| ||||||||      ||||| ||| ||  ||||||| || ||||| |||||||||||||    
T  9120472 tataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtg 9120373  T
Q  647 aaagcagagactctgtata 665  Q
    |||||||||||||||||||    
T  9120372 aaagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 9120740 - 9120676
Alignment:
Q  258 tgattttgatctcgtttaacatgcaaaaactcatcaaactaatttaccatataaaacgatttcaa 322  Q
    |||||||||||| | || ||||||| |||||||| | |||||||||||| ||||||| |||||||    
T  9120740 tgattttgatcttgattgacatgcataaactcatgagactaatttaccaaataaaacaatttcaa 9120676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 602
Target Start/End: Complemental strand, 29696989 - 29696896
Alignment:
Q  507 accctacaaatgcagccatccaacagtacataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacttcattctt 602  Q
    |||||||||||||||| |  ||| ||| |||||||||||||||  ||||||| ||||  |||||||||||| ||||||  | ||||| ||||||||    
T  29696989 accctacaaatgcagctactcaagagtccataatacaatataa--ttataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattctt 29696896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 29688946 - 29688873
Alignment:
Q  398 tttcataacatattgcataagctcatgcggcatact-gaatcatactacaaattcaatcaaacacatattaccc 470  Q
    |||||| ||||||| ||| |||||||  | |||||| | |||||| ||||||| ||||||||||||||||||||    
T  29688946 tttcatgacatatttcatcagctcatttgccatacttggatcatattacaaatgcaatcaaacacatattaccc 29688873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 8398 - 8494
Alignment:
Q  69 gttggttatagctctcaagttttgtctaaatcgtattagagatttaaagcttgagaaatttggtaagaaaagaaatctcatcttagatttgtctaaa 165  Q
    |||| ||||||| ||||||||||||||||| |  |||||||||| ||||| || ||||||| ||| |||| |||| ||| |||||| ||||||||||    
T  8398 gttgtttatagccctcaagttttgtctaaaccagattagagattcaaagcatgtgaaatttagtatgaaaggaaacctcgtcttagttttgtctaaa 8494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 24368053 - 24367996
Alignment:
Q  275 aacatgcaaaaactcatcaaactaatttaccatataaaacgatttcaaacagcgacca 332  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| || |||||    
T  24368053 aacatggataaactcatcaaactaatttaccatataaaacaatttcaaatagtgacca 24367996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 598 - 672
Target Start/End: Complemental strand, 24341069 - 24340995
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
    |||||||||| | | || |||||||| | |||||| |||| |||||||||||||| |||||| ||||||||||||    
T  24341069 ttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagcc 24340995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 598 - 672
Target Start/End: Complemental strand, 24353434 - 24353360
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagcc 672  Q
    |||||||||| | | || |||||||| | |||||| |||| |||||||||||||| |||||| ||||||||||||    
T  24353434 ttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacatagcc 24353360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 11005184 - 11005251
Alignment:
Q  404 aacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattaccca 471  Q
    |||||||| ||| |||||||| ||||||||| |||||| ||||||  ||||| |||||||||||||||    
T  11005184 aacatattacattagctcatgtggcatactggatcatattacaaacacaatcgaacacatattaccca 11005251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 11023754 - 11023820
Alignment:
Q  404 aacatattgcataagctcatgcggcatactgaatcatactacaaattcaatcaaacacatattaccc 470  Q
    |||||| | ||| |||||||| ||||||||| |||||| ||||||  ||||||||||||||||||||    
T  11023754 aacatagtacattagctcatgtggcatactggatcatattacaaacacaatcaaacacatattaccc 11023820  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 669
Target Start/End: Original strand, 11014933 - 11014968
Alignment:
Q  634 tcaccagggagtgaaagcagagactctgtatacata 669  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11014933 tcaccagggagtgaaagcagagactctgtgtacata 11014968  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 47451323 - 47451374
Alignment:
Q  618 ttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacata 669  Q
    |||||| |||||||| ||||| || |||||||||||||||||||| ||||||    
T  47451323 ttaagcttgctcattgtcaccgggaagtgaaagcagagactctgtgtacata 47451374  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 11004985 - 11005030
Alignment:
Q  250 tgtaattgtgattttgatctcgtttaacatgcaaaaactcatcaaa 295  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||    
T  11004985 tgtaattatgattttgatcttgatcaacatgcaaaaactcatcaaa 11005030  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 634 - 671
Target Start/End: Original strand, 11023945 - 11023982
Alignment:
Q  634 tcaccagggagtgaaagcagagactctgtatacatagc 671  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  11023945 tcaccggggagtgaaagcagggactctgtatacatagc 11023982  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 598 - 660
Target Start/End: Complemental strand, 29351080 - 29351018
Alignment:
Q  598 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactct 660  Q
    |||||||||| ||| || |||||||| |||||||| ||||| ||||||||||||| |||||||    
T  29351080 ttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagactct 29351018  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 29351166 - 29351122
Alignment:
Q  507 accctacaaatgcagccatccaacagtacataatacaatataatt 551  Q
    |||||||||||||| ||| |||| ||| |||||||||||||||||    
T  29351166 accctacaaatgcaaccacccaagagttcataatacaatataatt 29351122  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 639 - 667
Target Start/End: Original strand, 30119715 - 30119743
Alignment:
Q  639 agggagtgaaagcagagactctgtataca 667  Q
    |||||||||||||||||||||||||||||    
T  30119715 agggagtgaaagcagagactctgtataca 30119743  T

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