View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_high_2 (Length: 663)
Name: NF6892_high_2
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 5 - 644
Target Start/End: Complemental strand, 45179275 - 45178637
Alignment:
| Q |
5 |
agtgagaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccgaaagttagttgcaatattgtgttgtgc |
104 |
Q |
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| T |
45179275 |
agtgaaaagaagtaaagatccagtgtcaagtgagtagttcttagcttaagttatgaaatattaagtatatccgaa-gttagttgcaatattgtgttgtgc |
45179177 |
T |
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| Q |
105 |
acaaatgtgttaccagaatctggatatgaatatgatatagcgatgattannnnnnncaaatataagataggatacataatatttataaattcataaaaca |
204 |
Q |
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| T |
45179176 |
acaaatgtgttaccagaatctggatatgaatatgatttagggatgattatttttttcaaatataagataggatacataatatttataaattcataaaaca |
45179077 |
T |
|
| Q |
205 |
tagtgtgtgtaaacacgtgcgcgcgcacacacacaattgcaatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaaagataattac |
304 |
Q |
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| T |
45179076 |
tagtgtgtgtaaacacgtgcgcgcggacacacacaattgcaatttactgttgcatgtttaacgtttggaataaaaatctaactaaactaaagataattac |
45178977 |
T |
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| Q |
305 |
aattatgcagcaattagaagaaaaatatgcagcaaacttttgaagctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggc |
404 |
Q |
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| T |
45178976 |
aattatgcagcaattagaagaaaaatatgcagcaaatttttaaagctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggc |
45178877 |
T |
|
| Q |
405 |
attgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtacttaacaaattagtatcagtatcagacaagtattcaatac |
504 |
Q |
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| T |
45178876 |
attgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtacttaacaaattagtatcagtatcaaacaagtattcaatac |
45178777 |
T |
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| Q |
505 |
aataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataagatctgtgtttcnnnnnnnacatttgctactatctagaatttgtttata |
604 |
Q |
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| T |
45178776 |
aataggtaaagataatgcaagtattagtgcttaataggttctatcaaataagatctgtgtttcattttttacatttgctactatctagaatttgtttata |
45178677 |
T |
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| Q |
605 |
tagcaacaacatagttaaaacaatggatggtggtgggata |
644 |
Q |
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| T |
45178676 |
tagcaacaacatagttaaaacaatggatggtggtgggata |
45178637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 446
Target Start/End: Complemental strand, 45172203 - 45172007
Alignment:
| Q |
255 |
tgcatgtttaacgtttggaataaaaatctaactaaactaaagataattacaattatgcagcaatt-----agaagaaaaatatgcagcaaacttttgaa- |
348 |
Q |
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| T |
45172203 |
tgcatgtttgaactttagaataaaaatctcactaaactgaagatacttacaattatgccataattgcaaaagaagaaaaatatgcagcaatttttttaaa |
45172104 |
T |
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| Q |
349 |
gctaatatgcaacgacctggagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaa |
446 |
Q |
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| T |
45172103 |
gctaatatttaacgacctgtagatggaaaag-tcatgcatataaatagtcttaggcagagaacaaaattgtatgttgaaatggactttggataaaaaa |
45172007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 45169351 - 45169233
Alignment:
| Q |
268 |
tttggaataaaaatctaactaaactaaagataattacaattatgcagcaat-----------tagaagaaaaatatgcagcaaacttttgaagctaatat |
356 |
Q |
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| T |
45169351 |
tttggagtaaaaatctaactaaaataaatataattacaattacgcagcaatcatatttctgaaagatgaaaaatatgcagcaaa-tttttaagctaatag |
45169253 |
T |
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| Q |
357 |
gcaacgacctggagatgaaa |
376 |
Q |
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| T |
45169252 |
gcaacgacctgaagatgaaa |
45169233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 45168980 - 45168922
Alignment:
| Q |
499 |
caatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataaga |
557 |
Q |
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| T |
45168980 |
caatagaataggtgaagacaatgcaaatattagtgcttcataggttctgtccaataaga |
45168922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 24123723 - 24123768
Alignment:
| Q |
499 |
caatacaataggtaaagataatgcaagtattagtgcttcataggtt |
544 |
Q |
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| T |
24123723 |
caatacaataggtgaagacaatgcaaatattagtgcttcataggtt |
24123768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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