View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_high_4 (Length: 508)
Name: NF6892_high_4
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 2539361 - 2539851
Alignment:
| Q |
1 |
acattcttcttgtttgttcacttactgcctgggctggtaaaagttcgtgattatgctccttcacaaagctatgaatgacccatttcccatcttgccttct |
100 |
Q |
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| T |
2539361 |
acattcttcttgtttgttcacttactgcctgggctggtaaaagttcgtgattatgctccttcacaaagctatgaatgacccatttcccatcttgccttct |
2539460 |
T |
|
| Q |
101 |
ttttacatgcatgcttgctttacagtcggtcttagagcaagatcttcgaccagttgaattttcagattcttgcttgttctgtcgagctcgtggtcggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2539461 |
ttttacatgcatgcttgctttacagtcggtcttagagcaagatcttcgaccagttgaattttcagattcttgcttgttctgtcgagctcgtggtcggttg |
2539560 |
T |
|
| Q |
201 |
aaggatttatcatactctcgttttgttccatatctggaacaagcaaactttgcatctataaattctcttgaggtttttgaacggcgactattttgtattg |
300 |
Q |
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| T |
2539561 |
aaggatttatcatactctcgttttgttccatatctggaacaagcaaactttgcatctataaattctcttgaggtttttgaacggcgactattttgtattg |
2539660 |
T |
|
| Q |
301 |
cagtgttgaatcccattgatcgagcatattcttggtagaaagaataagcttccccatgagactcaaattccataccagaaagtggctcaagatttgtatc |
400 |
Q |
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| T |
2539661 |
cagtgttgaatcccattgatcgagcatattcttggtagaaagaataagcttccccatgagactcgaattccataccagaaagtggctcaagatttgtatc |
2539760 |
T |
|
| Q |
401 |
ttccttaaacattgcaatatcaactgtgggggaattcagatctccaccatttagagcatgtacctcaatgccagcttcaaccatatgtctg |
491 |
Q |
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| T |
2539761 |
ttccttaaacattgcaatatcaactgtgggggaattcagatctccaccatttagagcatgtacctcaatgccagcttcaaccatatgtctg |
2539851 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 42012653 - 42012741
Alignment:
| Q |
36 |
ggtaaaagttcgtgattatgctccttcacaaagctatgaatgacccatttcccatcttgccttctttttacatgcatgcttgctttaca |
124 |
Q |
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|||||||| || |||||||||| ||| ||||| |||| || |||||| ||||| || ||||| ||||||||||| ||||||||||| |
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| T |
42012653 |
ggtaaaagctcatgattatgctgcttaacaaaactataaacataccatttaccatcctgtcttctctttacatgcatacttgctttaca |
42012741 |
T |
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