View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_high_8 (Length: 402)
Name: NF6892_high_8
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 35665807 - 35666196
Alignment:
| Q |
13 |
aatattgaaacttgaaagccttaagaattgtgaattctttaacacaagagtaccatgtccccgagttaatgttacccacgaatagacacaacagcactaa |
112 |
Q |
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| T |
35665807 |
aatattgaaacttgaaagccttaagaattgtgaattctttaacacaagagtaccatgtccccgagttaatgttacccacgaatagacacaacagcactaa |
35665906 |
T |
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| Q |
113 |
gtgtgttaatatttaacggggcataaaggaacggttattaaacttaatattgttcctaacaaaccaaataagctagaaagaataaataattggtacaaga |
212 |
Q |
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| T |
35665907 |
gcgtgttaatatttaacggggcataaaggaccggttattaaacttaatattgttcctaacaaaccaaataagctagaaagaataaataattggtaccaga |
35666006 |
T |
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| Q |
213 |
atgactggttccaattgggagctcagggcttactatagatgtcaggagtacactccacagaagatgtgccaatattacactaaagcatacagctaagcca |
312 |
Q |
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| T |
35666007 |
atgactggttccaattgggagctcagggcttactatagatgtcaggagtacactccacagaagatgtgccaatattacactaaagaatacagctaagcca |
35666106 |
T |
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| Q |
313 |
tatccacattttctgagcaaatggacaggaaagaaatagatgctcagaagattcttgcgaagcacaacaaagactgcacattgaaactga |
402 |
Q |
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| T |
35666107 |
tatccacattttctgagcaaatggacaggaaagaaatagatgctcagaagattcttgcgaagcacaacaaagactgcacattgaaactga |
35666196 |
T |
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