View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6892_low_10 (Length: 421)
Name: NF6892_low_10
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 34777290 - 34777686
Alignment:
| Q |
10 |
catcatcataaccaatctggtaaccgggaaagacaaggtccaaactttcataatcatcatgagtatcaaactaatgggccacatgttggtgacagcaaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777290 |
catcatcataaccaatctggtaaccgggaaagacaaggtccaaactttcataatcatcatgagtatcaaactaatgggccacatgttggtgacagcaaat |
34777389 |
T |
|
| Q |
110 |
cagactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggtggtggaaacttctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777390 |
cagactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggtggtggaaacttctc |
34777489 |
T |
|
| Q |
210 |
tcgccgctagttagagtggtggttttgattagaagctgttaatgagtagcggttctacttcaagatggtttttgtgctccatcagaagcccatatgtatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777490 |
tcgccgctagttagagtggtggttttgattagaagctgttaatgagtagtggttctacttcaagatggtttttgtgctccatcagaagcccatatgtatt |
34777589 |
T |
|
| Q |
310 |
ggtgctttgttcagtcttattggggtatatgtagtgcaggttttggatgatttgagttttgaatggtaattgcagttgcatcagttatgttctgatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34777590 |
ggtgctttgttcagtcttattggggtatatttagtgcaggttttggatgatttgagttttgaatggtaattgcagttgcatcagttatgttctgatg |
34777686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 96 - 296
Target Start/End: Original strand, 34790802 - 34791009
Alignment:
| Q |
96 |
tggtgacagcaaatcagactactctgaacggcctgaagatggtaattatcaggctgggggaagatttagggagagaagtcaaactcactcaagacgaggt |
195 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
34790802 |
tggtgacagcaaatcagacaactctgaacgacctaaagatggtaactatcatgctgggggaagatttagggagaggggtcaaacgcactcaagacgaggt |
34790901 |
T |
|
| Q |
196 |
ggtggaaacttctctcgccgctagttag-------agtggtggttttgattagaagctgttaatgagtagcggttctacttcaagatggtttttgtgctc |
288 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||||||||||| |||||||||||||||||| |||| |||| || | | | ||||||| | ||||| |
|
|
| T |
34790902 |
ggtggaaacttctctcggcactagctagtagctatagtggtggtttcgattagaagctgttaatgggtagtggttatattcctacatggtttatatgctc |
34791001 |
T |
|
| Q |
289 |
catcagaa |
296 |
Q |
| |
|
|| ||||| |
|
|
| T |
34791002 |
caccagaa |
34791009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University