View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6892_low_11 (Length: 408)
Name: NF6892_low_11
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_11 |
 | |
|
| [»] scaffold0341 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 47744066 - 47744455
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744066 |
aatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
47744165 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
47744166 |
tttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaat |
47744265 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744266 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttgtcatatgtaagagagcaacaa |
47744365 |
T |
|
| Q |
301 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744366 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
47744455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 47716302 - 47716691
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
47716302 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgatattttaggattcaatt |
47716401 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47716402 |
tttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctctagcaatacctccaat |
47716501 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaa |
300 |
Q |
| |
|
||||||||||||||||||||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47716502 |
gattttgtagcgcctttcccagtctaattgtgctttctttattggatctatacatacacaaaattagatattttagtagtcatatgcatgagagcaacaa |
47716601 |
T |
|
| Q |
301 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
47716602 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttc |
47716691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 47758449 - 47758838
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
47758449 |
aatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgatattttaggattcaact |
47758548 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758549 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
47758648 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaa |
300 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
47758649 |
gattttatagcgcctttcccaatccaactgtgctttctttattggatctatacatacacaaaattagttattttagtagtcatatgtaagagagcaatga |
47758748 |
T |
|
| Q |
301 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
47758749 |
tctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttc |
47758838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 2 - 390
Target Start/End: Original strand, 47711552 - 47711940
Alignment:
| Q |
2 |
atacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
47711552 |
atacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttaggattcaactt |
47711651 |
T |
|
| Q |
102 |
ttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatg |
201 |
Q |
| |
|
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47711652 |
ttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatacctccaatg |
47711751 |
T |
|
| Q |
202 |
attttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagagagcaacaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47711752 |
attttgtagcgcctttcccaatccaaacatgctttttttattggatctatacatacacaaaattagctattttagtagtcatatgtaagagaacaacaat |
47711851 |
T |
|
| Q |
302 |
ctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
47711852 |
ctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttc |
47711940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 47701299 - 47701444
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
47701299 |
aatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggattcattt |
47701398 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataat |
146 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47701399 |
tttcatccaagagaatgttacttgctttaagatcacgatgtataat |
47701444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6497719 - 6497941
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
||||||||||| ||||| || ||| | ||||| ||| | || ||||| || ||| || |||||| || || |||||||||||||| |||||||||| | |
|
|
| T |
6497719 |
aatacttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcattt |
6497818 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
6497819 |
cttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctcgtgaaggtaaagaatgcctcgagcaatacctaaaat |
6497918 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaat |
223 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
6497919 |
gattttgtagcgcatttcccaat |
6497941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 6510745 - 6510895
Alignment:
| Q |
73 |
ccaaaatcagatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggt |
172 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| || |||||||| || || ||||| ||||||||||| |||| ||| ||| |||||||||||||||||| |
|
|
| T |
6510745 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
6510844 |
T |
|
| Q |
173 |
aaagaaggcctctagcaatacctccaatgattttgtagcgcctttcccaat |
223 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
6510845 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
6510895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6515063 - 6515285
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
||||||||||| ||||| || ||| ||||||| ||| | || ||||| || ||| || ||||| || || |||||||||| ||| |||||||||| | |
|
|
| T |
6515063 |
aatacttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatcc |
6515162 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
|| ||||||||||| || || ||||| ||||||||||| |||| ||| | | |||||||||| || |||||||||| ||||| |||||||||| ||| |
|
|
| T |
6515163 |
gtttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctcatggaggtaaagaatgcctcgagcaatacctaaaat |
6515262 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaat |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
6515263 |
gattgtgtagcgcctttcccaat |
6515285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 6525440 - 6525236
Alignment:
| Q |
2 |
atacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt |
101 |
Q |
| |
|
|||||||||| ||||| || ||| | ||||||||| | |||||||| || ||| || ||||| || || |||||||| | ||| |||||||||| || |
|
|
| T |
6525440 |
atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc |
6525341 |
T |
|
| Q |
102 |
ttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatg |
201 |
Q |
| |
|
||| ||||||||||| || || ||||| ||||||||||| |||||||| || |||||||||| ||||||||||||| |||| |||| ||||| ||||| |
|
|
| T |
6525340 |
ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatg |
6525241 |
T |
|
| Q |
202 |
atttt |
206 |
Q |
| |
|
||||| |
|
|
| T |
6525240 |
atttt |
6525236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 47775020 - 47774831
Alignment:
| Q |
4 |
acttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
103 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||| ||||||||||||| | || || | ||| || | |||||||| |||||||||||||||| | | |
|
|
| T |
47775020 |
acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt |
47774921 |
T |
|
| Q |
104 |
cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatac |
193 |
Q |
| |
|
||||||||||||| || || ||||| |||||||| |||||||| || || |||||||||| ||||| |||| ||| |||| | |||||| |
|
|
| T |
47774920 |
cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaataagacctcgaacaatac |
47774831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 47771130 - 47770938
Alignment:
| Q |
4 |
acttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
103 |
Q |
| |
|
|||||||| |||||||| |||| || ||||||| ||| || |||||| | || || | ||| || | |||||||||||||| |||||||||| || | |
|
|
| T |
47771130 |
acttactaagttccaacaatttgatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagatatcttaggattcatctcat |
47771031 |
T |
|
| Q |
104 |
cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctc |
196 |
Q |
| |
|
|||||||||||||||| || ||||| | |||||| |||||||| || || |||||||||| ||||| |||||||| |||| | ||||||||| |
|
|
| T |
47771030 |
cgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcctcatgaagataaagaagacctcgaacaatacctc |
47770938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 47774686 - 47774628
Alignment:
| Q |
330 |
aatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctct |
388 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||| | ||||| | ||||||| |
|
|
| T |
47774686 |
aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctct |
47774628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 6498077 - 6498142
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttc |
390 |
Q |
| |
|
||||||| || |||||||| |||||||| ||| ||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
6498077 |
taccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttc |
6498142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Complemental strand, 47770783 - 47770738
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcata |
370 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| |
|
|
| T |
47770783 |
taccaaatatgaagtaatcaagacttttatttgtaacaaattcata |
47770738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 47607400 - 47607328
Alignment:
| Q |
73 |
ccaaaatcagatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa |
145 |
Q |
| |
|
|||||||| || ||||||||||||| | ||| ||||| | ||| ||||| | |||||||||||||||||||| |
|
|
| T |
47607400 |
ccaaaatctgagattttaggattcatatgttcatctaataaaatattactaggtttaagatcacgatgtataa |
47607328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 11224962 - 11224684
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224962 |
aatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
11224863 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
11224862 |
tttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaat |
11224763 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11224762 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttg |
11224684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 28828946 - 28829193
Alignment:
| Q |
3 |
tacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaacttt |
102 |
Q |
| |
|
||||||||| |||||||| ||| || |||||||| |||| |||||||| ||||||| |||||| || || |||||||| | ||| |||| ||||| | | |
|
|
| T |
28828946 |
tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct |
28829045 |
T |
|
| Q |
103 |
tcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatga |
202 |
Q |
| |
|
| |||||||||||||| || |||||||||||||| |||||||| || ||| ||||||| || ||||| ||||||| |||| || ||||||| ||||| |
|
|
| T |
28829046 |
ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga |
28829145 |
T |
|
| Q |
203 |
ttttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
250 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||| ||| ||||||||| |
|
|
| T |
28829146 |
ttttgtagcgcttttcccaatctaattgtgctttctttgttggatcta |
28829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 28859966 - 28860184
Alignment:
| Q |
4 |
acttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
103 |
Q |
| |
|
|||||||| |||||||| | | || |||||||| |||| |||||||| | |||| |||||| || || |||||||| || || |||| ||||| | || |
|
|
| T |
28859966 |
acttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagcattcatgtctt |
28860065 |
T |
|
| Q |
104 |
cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatgat |
203 |
Q |
| |
|
|||||| ||||||||| || ||||| ||||| || ||||||||||| ||| |||||||||| ||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
28860066 |
cgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaataccttgaatgat |
28860165 |
T |
|
| Q |
204 |
tttgtagcgcctttcccaa |
222 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
28860166 |
tttgtagcgcttttcccaa |
28860184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 28854605 - 28854854
Alignment:
| Q |
1 |
aatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaact |
100 |
Q |
| |
|
||||||||||| |||||||| | || |||||||| |||| |||||||| ||||||| |||||| || || || ||||| ||||| |||| ||||| | |
|
|
| T |
28854605 |
aatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatgt |
28854704 |
T |
|
| Q |
101 |
tttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaat |
200 |
Q |
| |
|
|||| ||||||||||| || | ||||| |||||||| |||||||| || ||| |||||||||| ||||| || |||| |||| |||||||||| ||| |
|
|
| T |
28854705 |
tttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaat |
28854804 |
T |
|
| Q |
201 |
gattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
250 |
Q |
| |
|
|||||||||||| |||||||||| ||| || |||| ||| | ||||||| |
|
|
| T |
28854805 |
gattttgtagcgtttttcccaatctaattgtgctttctttgtaggatcta |
28854854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 27368599 - 27368823
Alignment:
| Q |
4 |
acttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
103 |
Q |
| |
|
|||||||| |||||||||||| |||||||| || ||| ||||||| ||| || || | |||| || | |||||||| ||||| |||||||||| || || |
|
|
| T |
27368599 |
acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt |
27368698 |
T |
|
| Q |
104 |
cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatgat |
203 |
Q |
| |
|
||||||| ||||| || || ||||| |||||||| |||||||| || | |||||||||||||||| |||||||| |||| |||||||||| ||||| |
|
|
| T |
27368699 |
cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaataccttttatgat |
27368798 |
T |
|
| Q |
204 |
tttgtagcgcctttcccaatccaat |
228 |
Q |
| |
|
||||||||| ||| ||||| |||| |
|
|
| T |
27368799 |
attgtagcgcgtttgccaattcaat |
27368823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 28874536 - 28874782
Alignment:
| Q |
4 |
acttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
103 |
Q |
| |
|
|||||||| ||| |||| | | || |||||||| |||| |||||||| ||||||| ||||| || || |||||||| || || |||| ||||| | || |
|
|
| T |
28874536 |
acttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcacgtctt |
28874635 |
T |
|
| Q |
104 |
cgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctctagcaatacctccaatgat |
203 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| || ||||||||||| ||| |||||| | ||||| ||||||| ||||| |||||| ||| |||||| |
|
|
| T |
28874636 |
cgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatgccttgaatgat |
28874735 |
T |
|
| Q |
204 |
tttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
250 |
Q |
| |
|
|||||||||| | |||||||| ||| || |||| || | |||||||| |
|
|
| T |
28874736 |
tttgtagcgcttctcccaatctaattgtgctttcttcagtggatcta |
28874782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 28829285 - 28829348
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctct |
388 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
28829285 |
taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctct |
28829348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 27369137 - 27369200
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctct |
388 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | ||||||||| |
|
|
| T |
27369137 |
taccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctct |
27369200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 28854962 - 28855025
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctct |
388 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| |||||||||| || | ||||||||| |
|
|
| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctct |
28855025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 28860321 - 28860384
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctct |
388 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||| | ||||||||||||| | ||||||||| |
|
|
| T |
28860321 |
taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctct |
28860384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 454842 - 454895
Alignment:
| Q |
325 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagca |
378 |
Q |
| |
|
||||||||| || |||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
454842 |
taccaaataagaagtaatcaagacttttatttagtacatattcataaacaagca |
454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 12425 - 12575
Alignment:
| Q |
73 |
ccaaaatcagatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggt |
172 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| || |||||||| || || ||||| ||||||||||| |||| ||| ||| |||||||||||||||||| |
|
|
| T |
12425 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
12524 |
T |
|
| Q |
173 |
aaagaaggcctctagcaatacctccaatgattttgtagcgcctttcccaat |
223 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
12525 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
12575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 20236091 - 20236164
Alignment:
| Q |
72 |
accaaaatcagatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa |
145 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||| || || | ||| ||||| |||||||||| |
|
|
| T |
20236091 |
accaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa |
20236164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 22130075 - 22130148
Alignment:
| Q |
72 |
accaaaatcagatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataa |
145 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||| || || | ||| ||||| |||||||||| |
|
|
| T |
22130075 |
accaaaatcagaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa |
22130148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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