View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6892_low_12 (Length: 406)

Name: NF6892_low_12
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6892_low_12
NF6892_low_12
[»] chr5 (2 HSPs)
chr5 (233-312)||(188130-188208)
chr5 (236-308)||(15446053-15446124)
[»] chr6 (1 HSPs)
chr6 (236-308)||(28669167-28669238)
[»] chr2 (1 HSPs)
chr2 (236-315)||(19245462-19245540)
[»] chr3 (1 HSPs)
chr3 (243-308)||(26207465-26207529)
[»] chr4 (1 HSPs)
chr4 (233-283)||(18437757-18437806)
[»] scaffold0684 (1 HSPs)
scaffold0684 (236-308)||(5406-5477)
[»] scaffold0163 (1 HSPs)
scaffold0163 (236-308)||(2641-2712)
[»] chr8 (1 HSPs)
chr8 (236-308)||(31148652-31148723)
[»] chr1 (1 HSPs)
chr1 (236-308)||(22789058-22789129)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 188208 - 188130
Alignment:
Q  233 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacat 312  Q
    |||||||||||||||| ||||||||||||| | |||||||| | ||||||||||| |||  |||||||||||||||||||    
T  188208 aaatgatgaagatgaaagtgttgatatgatggaagataatccatataattgacga-tttattcgtgatttatgattacat 188130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 15446053 - 15446124
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    ||||||||| ||||||||||||||||  || ||||||| | |||||||| ||  ||| |||||||||||||||    
T  15446053 tgatgaagacgaacgtgttgatatgacgggggataatccatataattgaaga-attcttcgtgatttatgatt 15446124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 28669167 - 28669238
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    ||||||||| |||| |||||||||||| || ||||||||| ||||||||||| |||| |||||||||||||||    
T  28669167 tgatgaagacgaacatgttgatatgatgggggataatctatataattgacga-tttcttcgtgatttatgatt 28669238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 19245462 - 19245540
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgattacatcta 315  Q
    ||||||||| ||||||||||||||||| || ||||||| | ||||||||| | |||| ||||||||||||||| ||||||    
T  19245462 tgatgaagacgaacgtgttgatatgataggggataatccatataattgac-aatttcttcgtgatttatgattgcatcta 19245540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 26207465 - 26207529
Alignment:
Q  243 gatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    |||| |||||||||||||||||| ||||||| | ||||||||||| |||| |||||||||||||||    
T  26207465 gatggacgtgttgatatgattggggataatccatataattgacga-tttcttcgtgatttatgatt 26207529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 18437806 - 18437757
Alignment:
Q  233 aaatgatgaagatgaacgtgttgatatgattggagataatctaaataattg 283  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  18437806 aaatgatgaagatgaacgtgttgatatgattgg-gataatccatataattg 18437757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 5477 - 5406
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  5477 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 5406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 2641 - 2712
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||||||| |||| | |||||||||||||    
T  2641 tgatgaagatgaacttgttgatatgatggaggataatccatataattgacga-tttctttgtgatttatgatt 2712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 31148652 - 31148723
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    |||||||||||||| |||||||||||| |  ||||||| | ||||||| |||  ||| |||||||||||||||    
T  31148652 tgatgaagatgaacatgttgatatgatggatgataatccatataattggcga-cttcttcgtgatttatgatt 31148723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 22789058 - 22789129
Alignment:
Q  236 tgatgaagatgaacgtgttgatatgattggagataatctaaataattgacgattttcatcgtgatttatgatt 308  Q
    |||||||||||||| |||||| ||||| || ||||||||| ||||||| |||  ||| | |||||||||||||    
T  22789058 tgatgaagatgaacttgttgacatgatgggggataatctatataattggcga-cttctttgtgatttatgatt 22789129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University