View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_low_15 (Length: 364)
Name: NF6892_low_15
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_15 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15884919 - 15885263
Alignment:
| Q |
1 |
tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc |
100 |
Q |
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||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
15884919 |
tggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
15885018 |
T |
|
| Q |
101 |
catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg |
200 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15885019 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtctttg |
15885118 |
T |
|
| Q |
201 |
gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
15885119 |
gggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgaga |
15885218 |
T |
|
| Q |
301 |
ggttgcatagacgaattgatcatatactggaaaatatcatcattg |
345 |
Q |
| |
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||||||||||||| ||||||| ||||| ||||| |||||||||| |
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| T |
15885219 |
ggttgcatagacgtattgatcgaatactagaaaacatcatcattg |
15885263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 12638115 - 12637804
Alignment:
| Q |
15 |
caaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactg |
114 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||| | | ||||||||||||||||| |||| ||| | ||||| ||| |||||||| ||||| |
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| T |
12638115 |
caaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcactc |
12638016 |
T |
|
| Q |
115 |
aacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatc |
214 |
Q |
| |
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|| |||||| |||||| | |||| | | | |||||||||||||||||||||||||| ||||||| || ||| | ||||| || |||||||| |
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| T |
12638015 |
aagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaatc |
12637916 |
T |
|
| Q |
215 |
aattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacga |
314 |
Q |
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| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||| |||||||||| | |
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| T |
12637915 |
agttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtattgcatagacaa |
12637816 |
T |
|
| Q |
315 |
attgatcatata |
326 |
Q |
| |
|
||||||| |||| |
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|
| T |
12637815 |
attgatcttata |
12637804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 12611129 - 12610796
Alignment:
| Q |
1 |
tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc |
100 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| || | |||||||||||||||| ||||| ||||||| | |||| |||| ||| | ||||| || | |
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| T |
12611129 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgattcgcaacaagggtcgcc |
12611030 |
T |
|
| Q |
101 |
catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg |
200 |
Q |
| |
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| |||| | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| | ||||||||| | | | |
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| T |
12611029 |
cgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctatt |
12610930 |
T |
|
| Q |
201 |
gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
| |
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|| | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
12610929 |
ggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggaga |
12610830 |
T |
|
| Q |
301 |
ggttgcatagacgaattgatcatatactggaaaa |
334 |
Q |
| |
|
|||||||||| | ||||||||| ||||| ||||| |
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| T |
12610829 |
ggttgcataggcaaattgatcaaatactagaaaa |
12610796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 29 - 344
Target Start/End: Complemental strand, 63234 - 62919
Alignment:
| Q |
29 |
ttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactgaacttgtagtttca |
128 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| | | ||||| |||||||||||||| || || |
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| T |
63234 |
ttcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcactgaacttgtacttaca |
63135 |
T |
|
| Q |
129 |
tcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaattgcaggaggtt |
228 |
Q |
| |
|
||| | || ||||| |||| | |||||||||||| |||||||||||| ||||||| |||| |||| ||||| || || |||||||| |||||||| |
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| T |
63134 |
acaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattgggaaatataggatcaattggaggaggtt |
63035 |
T |
|
| Q |
229 |
ttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatact |
328 |
Q |
| |
|
|||| || |||| | ||||||||||| ||||||||||||||| | | | | |||||||||||| ||||||||||||||| | ||||||| ||||| |
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|
| T |
63034 |
ttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagaggttgcatagacaacttgatcagatact |
62935 |
T |
|
| Q |
329 |
ggaaaatatcatcatt |
344 |
Q |
| |
|
||||| ||| ||||| |
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| T |
62934 |
tgaaaacatcgtcatt |
62919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 342
Target Start/End: Original strand, 5626 - 5752
Alignment:
| Q |
216 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa |
315 |
Q |
| |
|
|||||||||||||||||| | || || ||||||| || ||||||||||| |||| ||| |||||||||||||||| ||||||| | | ||| ||| || |
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|
| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa |
5725 |
T |
|
| Q |
316 |
ttgatcatatactggaaaatatcatca |
342 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |
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|
| T |
5726 |
ctgatcaaatacttgaaaacatcatca |
5752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 23146811 - 23146686
Alignment:
| Q |
217 |
ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat |
316 |
Q |
| |
|
||||||| ||||||||| | || || ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |
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|
| T |
23146811 |
ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac |
23146712 |
T |
|
| Q |
317 |
tgatcatatactggaaaatatcatca |
342 |
Q |
| |
|
|||||| ||| | ||||| ||||||| |
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|
| T |
23146711 |
tgatcagatatttgaaaacatcatca |
23146686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 23039909 - 23039811
Alignment:
| Q |
244 |
tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatca |
342 |
Q |
| |
|
||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| ||||||| |
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|
| T |
23039909 |
tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatca |
23039811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
| Q |
216 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
300 |
Q |
| |
|
||||||||||||||| || | || || |||||||||| ||||||||||||||| |||| ||||| | |||||||| ||||||| |
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|
| T |
23033743 |
attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga |
23033659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 23037032 - 23036934
Alignment:
| Q |
244 |
tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatca |
342 |
Q |
| |
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||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| ||||||| |
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|
| T |
23037032 |
tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatca |
23036934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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