View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_low_16 (Length: 357)
Name: NF6892_low_16
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 41380215 - 41380558
Alignment:
| Q |
1 |
ctagctcatataatgtatctgtagtttaattttctcatctatttttacactttctaagttttgtacttcattcaagcatctattatagatgctatacaaa |
100 |
Q |
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| T |
41380215 |
ctagctcatataatgtatctgtagtttaattttctcatccatttttacactttctaagttttgtacttcattcaagcatctattatagatgctatacaaa |
41380314 |
T |
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| Q |
101 |
caccaaccaaagtctcaccaaaaaa-gcttcacttaaaacatttaagcaagnnnnnnnnnntcattacatcttccacacacaaaa-atatcattgaatag |
198 |
Q |
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| T |
41380315 |
caccaaccaaagtctccccaaaaaaagcttcacttaaaacatttaagcaagaaaaaaaaa-tcattgaatcttccacacacaaaaaatatcattgaatac |
41380413 |
T |
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| Q |
199 |
aagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatcaatcatagaga |
298 |
Q |
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| T |
41380414 |
aagcaatttccttcatttgttcttcaattgaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatcaatcatagaga |
41380513 |
T |
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| Q |
299 |
aaatagacatcatcattgccaaggagtttaagagtaaaactggta |
343 |
Q |
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| T |
41380514 |
aaatagacatcatcattgtcaaggagtttaagagtaaaactggta |
41380558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 8043812 - 8043677
Alignment:
| Q |
168 |
atcttccacacacaaaaa-tatcattgaatagaagcaatttccttcattt-gttcttcaattgaaactcaattatgtacattgaaattggaaaatagata |
265 |
Q |
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| T |
8043812 |
atcttccacacacaaaaaatatcattgaatagaaacaatttccttcattttgttctaccattgaaactcaaatatgtacattgaaattgaaaaatagata |
8043713 |
T |
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| Q |
266 |
gtttattggcagcaaataaatcaatcatagagaaaa |
301 |
Q |
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| T |
8043712 |
gttcattggcagaaaataaacaaatcatagagaaaa |
8043677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 8033814 - 8033741
Alignment:
| Q |
228 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaataaatcaatcatagagaaaa |
301 |
Q |
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| T |
8033814 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaataaataaatcatagagaaaa |
8033741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 7969970 - 7970065
Alignment:
| Q |
228 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaata-aatcaatcatagagaaaatagacatcatcattgccaagg |
322 |
Q |
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| T |
7969970 |
gaaactcagttatgtgcattgaaattggaaaatagatagttcattgccagaaaatagagaaaagcatagagaaaatagatatcatcattgtcaagg |
7970065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 8043975 - 8043890
Alignment:
| Q |
5 |
ctcatataatgtatctgtagtttaa-ttttctcatctatttttacactttctaagttttgtacttcattcaagcatctattataga |
89 |
Q |
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| T |
8043975 |
ctcatattatgtatctgtagtttaatttttctcatcctttttcatagtttctatgtgttgtacatcaatcaagcatctattataga |
8043890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 8033992 - 8033905
Alignment:
| Q |
8 |
atataatgtatctgtagtttaattttctcatctattttt---acactttctaagttttgtacttcattcaagcatctattatagatgcta |
94 |
Q |
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| T |
8033992 |
atataatgtatctgtagcttaattt-ctcatttttttttttaatactttctaa-ttttgtacttcaaccaagcatctattatagatgcta |
8033905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 7969835 - 7969879
Alignment:
| Q |
49 |
actttctaagttttgtacttcattcaagcatctattatagatgcta |
94 |
Q |
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| T |
7969835 |
actttctaa-ttttgtacttcaatcaagcatctattatagatgcta |
7969879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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