View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_low_17 (Length: 340)
Name: NF6892_low_17
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 45860405 - 45860713
Alignment:
| Q |
14 |
tggacatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtcatccatttaacctaaacacaaaacactgat |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45860405 |
tggaaatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtcacccatttaacctaaacacaaaacactgat |
45860504 |
T |
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| Q |
114 |
cttgaacacgggacactgccagtagagatcctagaagctctacctggaacagaactaaatatcattttaaaaggggatcaagcatataaaagcaggacat |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45860505 |
cttgaacacgggacactgccagtatagatcctagaagctctacctggaacagaactaaatatcattttaaaaggggatcaagcatataaaagcaggacat |
45860604 |
T |
|
| Q |
214 |
gtaatataaaaaatagtaaaaattgagattgacattctaggcaagagaagtgacctcaagcttatctgtagaaatgtctgatgaagatgttattccacgg |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45860605 |
gtaacataaaaaatagtaaaaattgagattgacattctaggcaagagaaatgacctcaagcttatctgtagaaatgtctgatgaagatgttattccacgg |
45860704 |
T |
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| Q |
314 |
acaactatc |
322 |
Q |
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| T |
45860705 |
acaactatc |
45860713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 57 - 322
Target Start/End: Original strand, 27004152 - 27004417
Alignment:
| Q |
57 |
aagatcaaaacaaagaaaacctaagtcatccatttaacctaaacacaaaacactgatcttgaacacgggacactgccagtagagatcctagaagctctac |
156 |
Q |
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| T |
27004152 |
aagatcaaaacaaagaaaacctaagcctctcatttaacctaaacacaaaacaccgaccttgaacatggcacactgcgggaagagatcctagaagctctac |
27004251 |
T |
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| Q |
157 |
ctggaacagaactaaatatcattttaaaaggggatcaagcatataaaagcaggacatgtaatataaaaaatagtaaaaattgagattgacattctaggca |
256 |
Q |
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| T |
27004252 |
ccggaacaagactaaatatcattttaaaaggggatcaagcatataaaagcaggacctgtaacataaaaaatagtaaaaattgagattgacattctaggca |
27004351 |
T |
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| Q |
257 |
agagaagtgacctcaagcttatctgtagaaatgtctgatgaagatgttattccacggacaactatc |
322 |
Q |
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| T |
27004352 |
agagaagtaacctcaagcttatttgtagaaatctctgataaagatgttattccatggataactatc |
27004417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 57 - 322
Target Start/End: Complemental strand, 35537091 - 35536826
Alignment:
| Q |
57 |
aagatcaaaacaaagaaaacctaagtcatccatttaacctaaacacaaaacactgatcttgaacacgggacactgccagtagagatcctagaagctctac |
156 |
Q |
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||||||||||||||||||||||||| | ||||||||||||| ||||||||| || |||||||| || ||||||| | |||||||||||||||||||| |
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| T |
35537091 |
aagatcaaaacaaagaaaacctaagcctctcatttaacctaaaaacaaaacaccgaccttgaacatggcacactgcgggaagagatcctagaagctctac |
35536992 |
T |
|
| Q |
157 |
ctggaacagaactaaatatcattttaaaaggggatcaagcatataaaagcaggacatgtaatataaaaaatagtaaaaattgagattgacattctaggca |
256 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35536991 |
ccggaacaagactaaatatcattttaaaaggggatcaagcatataaaagcaggacctgtaacataaaaaatagtaaaaattgagattgacattctaggca |
35536892 |
T |
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| Q |
257 |
agagaagtgacctcaagcttatctgtagaaatgtctgatgaagatgttattccacggacaactatc |
322 |
Q |
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|||||||| ||||||||||||| ||||||||| |||||| |||||||||||||| ||| ||||||| |
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| T |
35536891 |
agagaagtaacctcaagcttatttgtagaaatctctgataaagatgttattccatggataactatc |
35536826 |
T |
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