View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_low_19 (Length: 338)
Name: NF6892_low_19
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 4530289 - 4530578
Alignment:
| Q |
14 |
gacatcactgcctgaagcgatgtgtaaccttgtatctttgcagaaactttgcatgtataactgctcattattagaggaaagatatgcaaaaccatatggt |
113 |
Q |
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| T |
4530289 |
gacatcactgcccgaagcgatgcgtaaccttgtatctttgcagaaactttgcatgtataactgctcattattagaggaaagatatgcaaaaccatatggt |
4530388 |
T |
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| Q |
114 |
caagactggcgtaaaatctctcgcatccgaaaagttgagatccttcctatgagaccatcattactcaagtattttacttgagtcaaaaatctttcctcaa |
213 |
Q |
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| T |
4530389 |
caagactggcgtaaaatctctcgcatccgaaaagttgagatccttcctatgagaccatcattactcaagtattttacttgagtcaaaaatctttcctcaa |
4530488 |
T |
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| Q |
214 |
tcatggatgtgtttttga--atatactctcttaaatcgattaatattttacgacatttggatggtggttcatactgccatgattgaggtaaca |
304 |
Q |
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| T |
4530489 |
tcatggatgtgtttttgaatatatactctcttaaatcgattaatattttacgacatttggatggtggttcatact---atgattgaggtaaca |
4530578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 4499433 - 4499512
Alignment:
| Q |
164 |
gagaccatcattactcaagtattttacttgagtcaaaaatctttcctcaatcatggatgtgtttttgaatatactctctta |
244 |
Q |
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| T |
4499433 |
gagaccatcattactcaagtattttacttgagtc-aaaatctttcctcaatcatggaggtatttctgaatccactctctta |
4499512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 4520878 - 4520978
Alignment:
| Q |
168 |
ccatcattactcaagtattttacttgagtcaaaaatctttcctcaatcatggatgtgtttttgaatatactctcttaaatcgattaatattttacgacat |
267 |
Q |
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| T |
4520878 |
ccatcattactcaagtatttttcttgagtc-aaaatctttcatcaatcatggaggtatttctgaatccactctcttatatccatcaattttttatgacat |
4520976 |
T |
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| Q |
268 |
tt |
269 |
Q |
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|| |
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| T |
4520977 |
tt |
4520978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4499020 - 4499084
Alignment:
| Q |
14 |
gacatcactgcctgaagcgatgtgtaaccttgtatctttgcagaaactttgcatgtataactgct |
78 |
Q |
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|||||||||||| |||| ||| ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
4499020 |
gacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaactttgcatttctaactgct |
4499084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 18033449 - 18033396
Alignment:
| Q |
14 |
gacatcactgcctgaagcgatgtgtaaccttgtatctttgcagaaactttgcat |
67 |
Q |
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| T |
18033449 |
gacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaactttgcat |
18033396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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