View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6892_low_23 (Length: 268)
Name: NF6892_low_23
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24489300 - 24489047
Alignment:
| Q |
1 |
tcaagatatgcttcctccacagtttgcaagttgccaatgatgcccatgtaagttctatataactttacatcgtgctcgtcataatttattttaagacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24489300 |
tcaagatatgcttcctccacagtttgcaagttgccaatgatgccgatgtaagttctatataactttacatcgtgctcgtcataatttatttgaagacaag |
24489201 |
T |
|
| Q |
101 |
tccaagagaaatcccagctggttaatttcaagttcaacctcttggaggaagatggcacgggaactttggttaatttcaacctcttgaagtaagtatccaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24489200 |
tccaagagaaatccccgctggttaatttcaagttcaacctcttgaaggaagatggcacaggaactttggttaatttcaacctcttgacgtaagtatccaa |
24489101 |
T |
|
| Q |
201 |
cgtttcgagtatggggcagccagcagcgaggaagacagccattgattccacaatatt |
257 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
24489100 |
cgtttcgagtatggggcagc---cagcgaggaagacaaccattgaatccacaatatt |
24489047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25031460 - 25031505
Alignment:
| Q |
1 |
tcaagatatgcttcctccacagtttgcaagttgccaatgatgccca |
46 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
25031460 |
tcaaaatatgcttcctccacactctgcaagtttccaatgatgccca |
25031505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 17772413 - 17772376
Alignment:
| Q |
133 |
ttcaacctcttggaggaagatggcacgggaactttggt |
170 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17772413 |
ttcaacctcttggaggaaggtggcacgggaactttggt |
17772376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17772563 - 17772518
Alignment:
| Q |
1 |
tcaagatatgcttcctccacagtttgcaagttgccaatgatgccca |
46 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
17772563 |
tcaagatatgcttcctccatactctgcaagttgccaatgatgccca |
17772518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University