View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6892_low_3 (Length: 624)
Name: NF6892_low_3
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6892_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 218 - 600
Target Start/End: Original strand, 25268169 - 25268552
Alignment:
| Q |
218 |
aacctgtgttccgtggtccataaaatactactggagcttagttaattttgcatactgctacggacttaatttcacatttaatgtcaatannnnnnngtca |
317 |
Q |
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| T |
25268169 |
aacctgtggtccgtggtccataaaatactactggagcttagttaattttgcatactgctacggacttaatttcacatttaatgtcaatattcttttgtca |
25268268 |
T |
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| Q |
318 |
aacatttaatgtcattattatccttaaatgtataaaaatatgtttcctcagaaaaatgtacaaaaatatg---nnnnnnnnataaatgagtatgagggag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25268269 |
aacatttaatgtcattattatccttaaatgtataaaaatatgttccctcagaaaaatgtacaaaaatatgtttttttttttataaatgagtatgagggag |
25268368 |
T |
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| Q |
415 |
tatatgtgtataacgtctctcannnnnnnnnnnnnattacaagtttctctcttctcactcacaaaaccactaaaaaataacctttaagcccacagtgttt |
514 |
Q |
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| T |
25268369 |
tatatgtgtataacgtctctcatttttcattttttattacaagtttctctcttctcactcacaaaaccactaaaaaataacctttaagcccacagtgttt |
25268468 |
T |
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| Q |
515 |
tctgagaggaatctcaaaaatatattttcattaataaaactggataaatagttgtgttgatcatcttagttttacaaaggagaaac |
600 |
Q |
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| T |
25268469 |
tctgagaggaatctc--aaatatattttcattaataaaactggataaatagttgtggttatcatcttagttttacaaaggagaaac |
25268552 |
T |
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Back To:
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Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 41444454 - 41444269
Alignment:
| Q |
25 |
gtgatcatggtccatggagagtcagtgtagtatactttgacttaagcctgctagaaagaagcttaaaactgtttatctctttctccccttattaattctt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41444454 |
gtgatcatggtccatggagagtcagtgtagtatactttgacttaagcctgctagaaagaagcttaaaactgtttatctctttctccccttattaattctt |
41444355 |
T |
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| Q |
125 |
ccatcttcagaactgtatagt-nnnnnnnnntattcctatctctcttttgcaaatctacataattctaccaaaacaaaggcagtga |
209 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41444354 |
ccatcttcagaactgtatagtaaaaaaaaaatattcctatctctcttttgcaaatctacataattctaccaaaacaaaggaagtga |
41444269 |
T |
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