View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6892_low_5 (Length: 525)

Name: NF6892_low_5
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6892_low_5
NF6892_low_5
[»] chr6 (9 HSPs)
chr6 (100-516)||(26593025-26593437)
chr6 (1-141)||(13565136-13565276)
chr6 (1-141)||(13569691-13569831)
chr6 (1-141)||(13574223-13574363)
chr6 (1-141)||(13576762-13576902)
chr6 (343-442)||(25822467-25822565)
chr6 (471-516)||(16170092-16170137)
chr6 (10-111)||(25822805-25822906)
chr6 (71-108)||(26593068-26593105)
[»] chr3 (4 HSPs)
chr3 (143-442)||(1052219-1052515)
chr3 (8-108)||(1052156-1052256)
chr3 (343-442)||(15408299-15408397)
chr3 (468-512)||(1052538-1052582)
[»] chr1 (3 HSPs)
chr1 (3-140)||(12630614-12630751)
chr1 (354-516)||(12630901-12631062)
chr1 (148-278)||(12630687-12630817)
[»] scaffold0012 (2 HSPs)
scaffold0012 (3-134)||(51557-51688)
scaffold0012 (343-516)||(51255-51427)
[»] chr2 (1 HSPs)
chr2 (482-516)||(17150395-17150429)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 100 - 516
Target Start/End: Original strand, 26593025 - 26593437
Alignment:
Q  100 ccttatgtcatctttaacaaccagtacgacctcaacatcatactgaaccgaggtgatgggaagcgtttcttgccttatgtcctcttcatcaacaagtatg 199  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||  |||||    
T  26593025 ccttatgtcatcttcaacaaccagtacgacctaaacatcatactgaacagaggtgatgggaagcgtttcctgccttatgtcctattcatcaaccggtatg 26593124  T
Q  200 gtctcaatatcatgttgttccgtggcaacttcctgagcggaaacatcatccgagcattgtgcattttctaactcggtatgaacagattataattgtaatg 299  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||| ||||||||||     
T  26593125 ggctcaatatcatgttgtttcgtggcaacttcctgagcggaaacatcatccgagcattgtgcatttactgacttggtgtgaacagattgtaattgtaatt 26593224  T
Q  300 tattggcattcgcttttggtactgaaaatgtcatctgcatcactgttaccccctggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtcc 399  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||  |||| | ||||||||||||||| |||||||  ||||||||| ||     
T  26593225 tattggcatccgcttttggtactg-aaatgtcatctgcatcgctgttaccccccagagcattgaaggcttttgatga-ccctatgctgtcggggttttct 26593322  T
Q  400 ttaggtttccacttcggatgctgctgtttttgtgaaacaatacnnnnnnnnnnnnngtcaataacagtagtttctttcacaaggtgcagccatcgacaac 499  Q
    ||||||| |||||||||| | || ||||| | |||||||||||             |||||||||| || ||||||||||  |||||| |||||||||||    
T  26593323 ttaggttgccacttcggaggttgttgtttctctgaaacaatac-tttttttcttttgtcaataacatta-tttctttcacggggtgcaaccatcgacaac 26593420  T
Q  500 ttgaaatatgatgtcca 516  Q
    |||||||||||||||||    
T  26593421 ttgaaatatgatgtcca 26593437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13565276 - 13565136
Alignment:
Q  1 gagaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgc 100  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||| ||||||||||    
T  13565276 gagaggctgagttgttgcagtagtgtcaccttcctgtgtctctgcagattctgaaattttctccaagacatcaaccgaggtgtagggaaccgtttcctgc 13565177  T
Q  101 cttatgtcatctttaacaaccagtacgacctcaacatcata 141  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  13565176 cttatgtcatcttcaacaaccggtacgacctcagcatcata 13565136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13569831 - 13569691
Alignment:
Q  1 gagaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgc 100  Q
    |||||| |||||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||  |||||||||    
T  13569831 gagaggctgagctgttgcaatagtgtcaccttcctgtgtctctgtagattcggaaattttctccaagacatgaaccgaggtgctgggaactgtttcctgc 13569732  T
Q  101 cttatgtcatctttaacaaccagtacgacctcaacatcata 141  Q
    ||||||||||||| || |||| ||||||||| |||||||||    
T  13569731 cttatgtcatcttcaataaccggtacgacctaaacatcata 13569691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13574363 - 13574223
Alignment:
Q  1 gagaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgc 100  Q
    |||||| |||||||||||| ||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||| ||||||  |||||||||    
T  13574363 gagaggctgagctgttgcaatagtgtcaccttcctgtgtctttgcagattcagaacttttctccaagacatgaaccgaggtgttgggaactgtttcctgc 13574264  T
Q  101 cttatgtcatctttaacaaccagtacgacctcaacatcata 141  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  13574263 cttatgtcatcttcaacaaccggtacgacctcaacatcata 13574223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13576902 - 13576762
Alignment:
Q  1 gagaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgc 100  Q
    |||||| |||||||||||| ||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||| ||||||  |||||||||    
T  13576902 gagaggctgagctgttgcaatagtgtcaccttcctgtgtctttgcagattcagaacttttctccaagacatgaaccgaggtgttgggaactgtttcctgc 13576803  T
Q  101 cttatgtcatctttaacaaccagtacgacctcaacatcata 141  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  13576802 cttatgtcatcttcaacaaccggtacgacctcaacatcata 13576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 442
Target Start/End: Complemental strand, 25822565 - 25822467
Alignment:
Q  343 tgttaccccctggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtccttaggtttccacttcggatgctgctgtttttgtgaaacaatac 442  Q
    |||||||| | ||||||||||||||||| ||||| || |||  | ||  | ||||||||||||| |||||||||| ||||| |||| |||||||||||||    
T  25822565 tgttacccaccggagcttcgaaggctttggatgaacc-tataccatctagattgtccttaggttgccacttcggaggctgcggtttctgtgaaacaatac 25822467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 16170137 - 16170092
Alignment:
Q  471 ttctttcacaaggtgcagccatcgacaacttgaaatatgatgtcca 516  Q
    |||||| ||| | |||||||||||||||||||| ||||||||||||    
T  16170137 ttcttttacaggatgcagccatcgacaacttgagatatgatgtcca 16170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 25822906 - 25822805
Alignment:
Q  10 agctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgccttatgtca 109  Q
    ||||| ||||||| ||||  ||||||| | ||||||||| || |||||||  ||||||||||| | ||  |||||||||||||| ||||  ||||| |||    
T  25822906 agctgctgcagtaatgtcctcttcttgagcctctgcagaatcagaaatttcttccaagacatgtattgttgtgctgggaagcgtatcctttcttatatca 25822807  T
Q  110 tc 111  Q
    ||    
T  25822806 tc 25822805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 26593068 - 26593105
Alignment:
Q  71 tgaactgaggtgctgggaagcgtttcctgccttatgtc 108  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26593068 tgaacagaggtgatgggaagcgtttcctgccttatgtc 26593105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 143 - 442
Target Start/End: Original strand, 1052219 - 1052515
Alignment:
Q  143 tgaaccgaggtgatgggaagcgtttcttgccttatgtcctcttcatcaacaagtatggtctcaatatcatgttgttccgtggcaacttcctgagcggaaa 242  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| |  ||||  | |||| |||| ||||||| ||||||||||||||||||||||||||||    
T  1052219 tgaaccgaagtgctgggaagcgtttcctgccttatgtcctctacgacaaccggaatggcctcactatcatgctgttccgtggcaacttcctgagcggaaa 1052318  T
Q  243 catcatccgagcattgtgcattttctaactcggtatgaacagattataattgtaatgtattggcattcgcttttggtactgaaaatgtcatctgcatcac 342  Q
    |||||||||||| ||||||| ||||| ||||||| |||| | ||| ||||||||| ||||||||||| || |  ||||||| | ||||||||||||||      
T  1052319 catcatccgagcgttgtgcagtttctgactcggtgtgaataaattgtaattgtaaagtattggcatt-gcctgcggtactg-agatgtcatctgcatcgt 1052416  T
Q  343 tgttaccccctggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtccttaggtttccacttcggatgctgctgtttttgtgaaacaatac 442  Q
    |||||||||  |||| |||||||| ||||||||| ||||||| || || |||| |||||||||| |||||||||| |||||||||| |||||||||||||    
T  1052417 tgttacccctcggagtttcgaaggattttgatga-ccctatgccgacgaggttatccttaggttgccacttcggaggctgctgtttctgtgaaacaatac 1052515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 1052156 - 1052256
Alignment:
Q  8 tgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgccttatgt 107  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  1052156 tgagctgctgcagtagtgtcgccttcttgtgtctctgcagattcggaaattttctccaaaacatgaaccgaagtgctgggaagcgtttcctgccttatgt 1052255  T
Q  108 c 108  Q
    |    
T  1052256 c 1052256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 442
Target Start/End: Complemental strand, 15408397 - 15408299
Alignment:
Q  343 tgttaccccctggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtccttaggtttccacttcggatgctgctgtttttgtgaaacaatac 442  Q
    |||||||| | ||||||||||||||||| ||||| || |||  | ||  | ||||||||||||| |||||||||| ||||| |||| |||||||||||||    
T  15408397 tgttacccaccggagcttcgaaggctttggatgaacc-tataccatctagattgtccttaggttgccacttcggaggctgcggtttctgtgaaacaatac 15408299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 1052538 - 1052582
Alignment:
Q  468 agtttctttcacaaggtgcagccatcgacaacttgaaatatgatg 512  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||    
T  1052538 agtttctttcacggggtgcaaccatcgacaacttgaaatatgatg 1052582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 12630614 - 12630751
Alignment:
Q  3 gaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgcct 102  Q
    ||||||||| || ||||| |||||| |||||||||||||||||||| || |||| ||||||||||||||| |  |||||| ||||||||||||||| |||    
T  12630614 gaggttgagatgctgcagaagtgtccccttcttgtgtctctgcagagtcagaaactttctccaagacatgtatcgaggtgttgggaagcgtttccttcct 12630713  T
Q  103 tatgtcatctttaacaaccagtacgacctcaacatcat 140  Q
    ||| ||||| | ||||||| ||| |||||||| |||||    
T  12630714 tatatcatcgtcaacaaccggtatgacctcaatatcat 12630751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 516
Target Start/End: Original strand, 12630901 - 12631062
Alignment:
Q  354 ggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtccttaggtttccacttcggatgctgctgtttttgtgaaacaatacnnnnnnnnnnn 453  Q
    ||||||||||||||||| ||||| || |||| | ||| | ||||||||||||| ||||| |||| |||| ||||| |||||||||||||               
T  12630901 ggagcttcgaaggctttggatgaacc-tatgccatcgagattgtccttaggttgccactccggaggctgttgtttctgtgaaacaatacttttcttcttc 12630999  T
Q  454 nngtcaataacagtagtttctttcacaaggtgcagccatcgacaacttgaaatatgatgtcca 516  Q
      ||||||||||| | ||||||||||  | ||||||||||||||||||||  |||||||||||    
T  12631000 ttgtcaataacaggaatttctttcacgggatgcagccatcgacaacttgaggtatgatgtcca 12631062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 12630687 - 12630817
Alignment:
Q  148 cgaggtgatgggaagcgtttcttgccttatgtcctcttcatcaacaagtatggtctcaatatcatgttgttccgtggcaacttcctgagcggaaacatca 247  Q
    ||||||| ||||||||||||| | |||||| || || ||| ||||  |||||  |||||||||||| || || |||||||| || ||||  |||||| ||    
T  12630687 cgaggtgttgggaagcgtttccttccttatatcatcgtcaacaaccggtatgacctcaatatcatgctggtctgtggcaacatcttgagaagaaacaaca 12630786  T
Q  248 tccgagcattgtgcattttctaactcggtat 278  Q
     |||||  ||||||| || || |||||||||    
T  12630787 gccgagtgttgtgcagttgctgactcggtat 12630817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 51688 - 51557
Alignment:
Q  3 gaggttgagctgttgcagtagtgtcaccttcttgtgtctctgcagattctgaaattttctccaagacatgaactgaggtgctgggaagcgtttcctgcct 102  Q
    |||| |||| || ||||| |||||| |||||||||||||||||| | || |||||||||||||||||||| |  |||||||||||||||||||||| |||    
T  51688 gaggctgagatgctgcagaagtgtccccttcttgtgtctctgcaaagtcagaaattttctccaagacatgtatcgaggtgctgggaagcgtttccttcct 51589  T
Q  103 tatgtcatctttaacaaccagtacgacctcaa 134  Q
    ||| ||||| | ||||||| ||| | ||||||    
T  51588 tatatcatcgtcaacaaccggtatggcctcaa 51557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 516
Target Start/End: Complemental strand, 51427 - 51255
Alignment:
Q  343 tgttaccccctggagcttcgaaggcttttgatgacccctatgtcgtcggggttgtccttaggtttccacttcggatgctgctgtttttgtgaaacaatac 442  Q
    |||||||| | ||| ||||||||||||| ||||| || |||| | ||| | || |||||||||| ||||| |||| |||| ||||| |||||||||||||    
T  51427 tgttacccaccggatcttcgaaggctttggatgaacc-tatgccatcgagattttccttaggttgccactccggaggctgttgtttatgtgaaacaatac 51329  T
Q  443 nnnnnnnnnnnnngtcaataacagtagtttctttcacaaggtgcagccatcgacaacttgaaatatgatgtcca 516  Q
                 ||||||||||| | ||||||||||  | |||||||||||||||||||| ||||||||||||    
T  51328 ttttcttcttcttgtcaataacaggaatttctttcacgggatgcagccatcgacaacttgagatatgatgtcca 51255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 17150429 - 17150395
Alignment:
Q  482 ggtgcagccatcgacaacttgaaatatgatgtcca 516  Q
    ||||||||||||||||||||| |||||||||||||    
T  17150429 ggtgcagccatcgacaacttgtaatatgatgtcca 17150395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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