View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6892_low_8 (Length: 454)

Name: NF6892_low_8
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6892_low_8
NF6892_low_8
[»] scaffold0097 (1 HSPs)
scaffold0097 (13-438)||(16666-17091)
[»] chr2 (3 HSPs)
chr2 (13-438)||(20712827-20713252)
chr2 (58-106)||(20975226-20975274)
chr2 (219-258)||(20975080-20975119)
[»] chr7 (13 HSPs)
chr7 (58-114)||(18953268-18953324)
chr7 (58-114)||(18983315-18983371)
chr7 (58-114)||(18997961-18998017)
chr7 (66-114)||(18988125-18988173)
chr7 (57-97)||(22036781-22036821)
chr7 (58-97)||(22021063-22021102)
chr7 (67-97)||(20351799-20351829)
chr7 (67-104)||(661024-661061)
chr7 (59-108)||(24391077-24391126)
chr7 (59-95)||(16846801-16846837)
chr7 (58-114)||(19637580-19637636)
chr7 (68-108)||(22028324-22028364)
chr7 (59-91)||(22039898-22039930)
[»] chr1 (1 HSPs)
chr1 (70-108)||(39379433-39379471)
[»] chr4 (2 HSPs)
chr4 (70-115)||(3557379-3557424)
chr4 (70-114)||(3565398-3565442)


Alignment Details
Target: scaffold0097 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 16666 - 17091
Alignment:
Q  13 gacatcacagttccgaccgacataccacaaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacc 112  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16666 gacaccacagttccaaccgacataccaccaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacc 16765  T
Q  113 tcattggtgcagaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgggttccttatctgaaattaaaa 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16766 tcattggtgcggaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgtgttccttatctgaaattaaaa 16865  T
Q  213 aagagcctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaatcattgttgatagaagatatatagagcaggcatat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16866 aagagcctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaatcattgttgatagaagatatatagagcaggcatat 16965  T
Q  313 caatccattgcagcaaccaacaacctgataatattctttgtcggtgtatccggtaatatcgttgacatcaataatctcatgtaaatattgtatgggtaac 412  Q
    |||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||     
T  16966 caatccattgcagcaaccaacaacctcatgatattctttgtcagtgtatctggtaatatcgttgacatcagtaatctcatgtaaatattgtatgggtaaa 17065  T
Q  413 ggagcgagtgtggtatgtctggaatt 438  Q
    |||||||||||||||| | |||||||    
T  17066 ggagcgagtgtggtatctatggaatt 17091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 20712827 - 20713252
Alignment:
Q  13 gacatcacagttccgaccgacataccacaaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacc 112  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20712827 gacaccacagttccaaccgacataccaccaatgactaggatacgaaggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacc 20712926  T
Q  113 tcattggtgcagaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgggttccttatctgaaattaaaa 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20712927 tcattggtgcggaaccctacaagcttatgtttggcagttaaattatcataacctaacgagaaatggaaatgggaatcgtgttccttatctgaaattaaaa 20713026  T
Q  213 aagagcctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaatcattgttgatagaagatatatagagcaggcatat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20713027 aagagcctagtttaacagacgatgacctcgtggctgggttccagaaaccaaaagagtactcgtaatcattgttgatagaagatatatagagcaggcatat 20713126  T
Q  313 caatccattgcagcaaccaacaacctgataatattctttgtcggtgtatccggtaatatcgttgacatcaataatctcatgtaaatattgtatgggtaac 412  Q
    |||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||     
T  20713127 caatccattgcagcaaccaacaacctcatgatattctttgtcagtgtatctggtaatatcgttgacatcagtaatctcatgtaaatattgtatgggtaaa 20713226  T
Q  413 ggagcgagtgtggtatgtctggaatt 438  Q
    |||||||||||||||| | |||||||    
T  20713227 ggagcgagtgtggtatctatggaatt 20713252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 20975274 - 20975226
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaact 106  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  20975274 aggaaaactttgaatatttctccaaatattttcgcccaaagtgaaaact 20975226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 20975119 - 20975080
Alignment:
Q  219 ctagtttaacagacgatgacctcgtggctgggttccagaa 258  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  20975119 ctagtttatcagacaatgacctcgtggctgggttccagaa 20975080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 18953268 - 18953324
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18953268 aggaaaactttgaatatgtctccaaacattatcgccaaaattgaaaactctcacctc 18953324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 18983315 - 18983371
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18983315 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18983371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 18997961 - 18998017
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18997961 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18998017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 18988125 - 18988173
Alignment:
Q  66 attgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  18988125 attgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 18988173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 22036821 - 22036781
Alignment:
Q  57 aaggaaaacattgaatatttctccaaacattatcgcccaaa 97  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  22036821 aaggaaaactttcaatatttctccaaacattatcgcccaaa 22036781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 22021102 - 22021063
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaa 97  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  22021102 aggaaaactttcaatatttctccaaacattatcgcccaaa 22021063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 20351829 - 20351799
Alignment:
Q  67 ttgaatatttctccaaacattatcgcccaaa 97  Q
    |||||||||||||||||||||||||||||||    
T  20351829 ttgaatatttctccaaacattatcgcccaaa 20351799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 661024 - 661061
Alignment:
Q  67 ttgaatatttctccaaacattatcgcccaaagtgaaaa 104  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  661024 ttgaatatttctccaaacattatcgcctaaattgaaaa 661061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 24391126 - 24391077
Alignment:
Q  59 ggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactct 108  Q
    ||||||| ||||||||||||||||| |||||| |||||| | ||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactct 24391077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 16846801 - 16846837
Alignment:
Q  59 ggaaaacattgaatatttctccaaacattatcgccca 95  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  16846801 ggaaaactttgaatatttctccaagcattatcgccca 16846837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 19637580 - 19637636
Alignment:
Q  58 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    |||||||| |||||||||||||||||| ||||| || ||| | |||||||| |||||    
T  19637580 aggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcacctc 19637636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 22028364 - 22028324
Alignment:
Q  68 tgaatatttctccaaacattatcgcccaaagtgaaaactct 108  Q
    |||||||| ||||||||||||||||||||| | ||||||||    
T  22028364 tgaatattcctccaaacattatcgcccaaactaaaaactct 22028324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 22039930 - 22039898
Alignment:
Q  59 ggaaaacattgaatatttctccaaacattatcg 91  Q
    ||||||| |||||||||||||||||||||||||    
T  22039930 ggaaaactttgaatatttctccaaacattatcg 22039898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 39379433 - 39379471
Alignment:
Q  70 aatatttctccaaacattatcgcccaaagtgaaaactct 108  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  39379433 aatatttctccaaacattatcacccaaactgaaaactct 39379471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 3557424 - 3557379
Alignment:
Q  70 aatatttctccaaacattatcgcccaaagtgaaaactctgacctca 115  Q
    ||||||||||||||||||||| || ||| |||||||||| ||||||    
T  3557424 aatatttctccaaacattatcacctaaactgaaaactctaacctca 3557379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 3565442 - 3565398
Alignment:
Q  70 aatatttctccaaacattatcgcccaaagtgaaaactctgacctc 114  Q
    ||||||||||||||||||||| || ||| |||||||||| |||||    
T  3565442 aatatttctccaaacattatcacctaaactgaaaactctcacctc 3565398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University