View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6892_low_9 (Length: 429)

Name: NF6892_low_9
Description: NF6892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6892_low_9
NF6892_low_9
[»] chr5 (4 HSPs)
chr5 (14-341)||(7392593-7392920)
chr5 (58-265)||(13954871-13955078)
chr5 (113-172)||(29685506-29685566)
chr5 (113-170)||(12566647-12566704)
[»] chr8 (1 HSPs)
chr8 (63-270)||(10248998-10249205)
[»] chr1 (8 HSPs)
chr1 (58-220)||(7856985-7857147)
chr1 (108-176)||(16146873-16146941)
chr1 (103-176)||(24658285-24658358)
chr1 (108-169)||(52277939-52278000)
chr1 (141-254)||(34774648-34774761)
chr1 (103-150)||(46815065-46815112)
chr1 (113-172)||(4391311-4391371)
chr1 (108-170)||(8327249-8327311)
[»] chr2 (4 HSPs)
chr2 (113-221)||(14107050-14107158)
chr2 (113-194)||(37771319-37771400)
chr2 (58-181)||(7873622-7873744)
chr2 (113-172)||(42049044-42049104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (62-192)||(57453-57583)
[»] scaffold0050 (1 HSPs)
scaffold0050 (103-194)||(36173-36264)
[»] chr6 (1 HSPs)
chr6 (114-270)||(20702453-20702607)
[»] chr4 (4 HSPs)
chr4 (62-182)||(38640089-38640209)
chr4 (103-170)||(53814155-53814222)
chr4 (113-172)||(1798854-1798914)
chr4 (113-172)||(10388271-10388331)
[»] chr3 (5 HSPs)
chr3 (108-192)||(14193424-14193508)
chr3 (115-174)||(40024152-40024211)
chr3 (108-194)||(25647167-25647253)
chr3 (118-192)||(37122807-37122881)
chr3 (103-176)||(47235048-47235122)
[»] chr7 (3 HSPs)
chr7 (113-176)||(3477752-3477815)
chr7 (115-174)||(34389397-34389456)
chr7 (103-167)||(42533940-42534004)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 7392593 - 7392920
Alignment:
Q  14 acatcagaatagtaaaaataaggaacacatagtgacgtcgtgggaccaaaacaagcaaaatctgaagcccatggccgccggcgtaaacaaaccccaacaa 113  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || | |||||||||||| ||| |    
T  7392593 acatcggaatagtaaaaataaggaacacacagtgacgtcatgggaccaaaacaagcaaaatctgaagcccatggccaccagtgtaaacaaaccctaacca 7392692  T
Q  114 ccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7392693 ccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaa 7392792  T
Q  214 cacacctaacgactccacaattcacccccttcacaccacacattcgtcaccatcaccccgtcactaccaacactcactctaaccggaccacccaccaaca 313  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7392793 cacacctaacggctccacaattcaccccattcacaccacacattcgtcaccaccaccccgtcactaccaacactcactccaaccggaccacccaccaaca 7392892  T
Q  314 acatacccaacttccgccgccggaaacg 341  Q
     |  ||||||||||||||||||||||||    
T  7392893 gccgacccaacttccgccgccggaaacg 7392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 58 - 265
Target Start/End: Original strand, 13954871 - 13955078
Alignment:
Q  58 accaaaacaagcaaaatctgaagcccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgaggg 157  Q
    |||||| |||||||||||||||||||| | || ||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||| ||    
T  13954871 accaaatcaagcaaaatctgaagcccacgaccaccgtcgtgaacaaaccccaaccaccacgatccttacaacgacaaacgattcgggagtttgttgaagg 13954970  T
Q  158 aggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaacacacctaacgactccacaattcacccccttcacaccacacatt 257  Q
    ||||||||||||||||||| ||||| || ||||||||  | ||||||||||| ||  ||||||| |||  ||| |  ||||||||| ||||| |||| |     
T  13954971 aggattaatcgtgaatgaaagagatgccgccacacctgtagccaccggaaacagataacacctatcgaaaccatacatcaccccctccacacgacacgtc 13955070  T
Q  258 cgtcacca 265  Q
    ||||||||    
T  13955071 cgtcacca 13955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 29685566 - 29685506
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaa 172  Q
    |||||||||||||||||||| |||||| |||||||| ||  || |||||||||||||||||    
T  29685566 accacgatccttacgacgacgaacgattcgggagttgcgaagaaggaggattaatcgtgaa 29685506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 12566704 - 12566647
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtg 170  Q
    |||||||||| || |||||| |||||||||||||  ||| || |||||||||||||||    
T  12566704 accacgatccatatgacgacgaacgatccgggagagcgtcgaaggaggattaatcgtg 12566647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 270
Target Start/End: Original strand, 10248998 - 10249205
Alignment:
Q  63 aacaagcaaaatctgaagcccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggat 162  Q
    ||||||||||||||||||||||   || |||| |  ||||||||||||| ||||||||||||||||  |||||||||  ||||||||||||| |||||||    
T  10248998 aacaagcaaaatctgaagcccacaaccaccggtgcgaacaaaccccaaccaccacgatccttacgatcacaaacgatttgggagttcgttgaaggaggat 10249097  T
Q  163 taatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaacacacctaacgactccacaattcacccccttcacaccacacattcgtca 262  Q
    |||||||||||||| ||||| || ||||| ||  |  || |||||||||| |||||||| || | |||||  ||||||||| |||||||||| | |||||    
T  10249098 taatcgtgaatgaaagagatgccgccacaactgtagtcatcggaaacggaccacacctatcggcaccacacatcaccccctccacaccacacgtccgtca 10249197  T
Q  263 ccatcacc 270  Q
    ||| ||||    
T  10249198 ccaccacc 10249205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 7857147 - 7856985
Alignment:
Q  58 accaaaacaagcaaaatctgaagcccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgaggg 157  Q
    ||||||||||||| ||||||||||||| | || ||| |   |||||||| |||| | ||||||||||||||||||||||||||| | |||||||||| ||    
T  7857147 accaaaacaagcagaatctgaagcccacgaccaccgacacgaacaaacctcaaccatcacgatccttacgacgacaaacgatccagaagttcgttgaagg 7857048  T
Q  158 aggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaacacacct 220  Q
    |||||||||| |||||| | ||||| || |||||| |||  |||||||||||| | |||||||    
T  7857047 aggattaatcatgaatggaagagatgcctccacacgtacggccaccggaaacgaaccacacct 7856985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 16146941 - 16146873
Alignment:
Q  108 caacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaa 176  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  16146941 caaccaccacgatccttatgacgacaaacgatccgggagttcgttgaaggaggattaatcgtggatgaa 16146873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 24658358 - 24658285
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaa 176  Q
    |||| |||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| || |||||    
T  24658358 aaccacaaccaccacgatccttacgacaacaaacaatccgggagttcgttgaaggaggattaatcatggatgaa 24658285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 52278000 - 52277939
Alignment:
Q  108 caacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgt 169  Q
    |||| ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||    
T  52278000 caaccaccacgatccttacgacgacatacgatccagaagttcgttgatggaggattaatcgt 52277939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 34774761 - 34774648
Alignment:
Q  141 cgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaacacacctaacgactccacaattcaccc 240  Q
    |||||||||||| | ||||||||||||||| ||||| |||||  | ||||||||  | ||||||||||| || |||||||| || | ||||   ||||||    
T  34774761 cgggagttcgttaaaggaggattaatcgtgtatgaaagagatgtcgccacacctgaagccaccggaaacagaccacacctatcggcaccacttatcaccc 34774662  T
Q  241 ccttcacaccacac 254  Q
    ||| ||||||||||    
T  34774661 cctccacaccacac 34774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 46815065 - 46815112
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagttcg 150  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  46815065 aaccacaaccaccacgatccttacgacaacaaacgatccgggagttcg 46815112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 4391371 - 4391311
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaa 172  Q
    |||||||||||||||||||| |||||||| |||||| ||  || |||||||||||||||||    
T  4391371 accacgatccttacgacgacgaacgatccaggagttgcgaagaaggaggattaatcgtgaa 4391311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 8327249 - 8327311
Alignment:
Q  108 caacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtg 170  Q
    |||| ||| ||||||  |||||||| |||||||||||||  || |||||||||||||||||||    
T  8327249 caaccaccccgatccaaacgacgacgaacgatccgggagcacgatgagggaggattaatcgtg 8327311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 14107050 - 14107158
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacgga 212  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||| | || || | |||||||||    
T  14107050 accatgatccttacgacgacaaacgatccgggagttcgttgaaggaagattaatcgtgaatgaaagagatgccaccacacttgcagccgctggaaacgga 14107149  T
Q  213 acacaccta 221  Q
     ||||||||    
T  14107150 tcacaccta 14107158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 37771319 - 37771400
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacct 194  Q
    |||||||| ||||| |||||||||||||||||||||||||||  ||||||||||| ||| ||||  |||| |||||||||||    
T  37771319 accacgattcttacaacgacaaacgatccgggagttcgttgaaagaggattaatcatgactgaaaaagattccaccacacct 37771400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 7873744 - 7873622
Alignment:
Q  58 accaaaacaagcaaaatctgaagc-ccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagg 156  Q
    ||||||||||||||||||| |||| ||| |||| ||| ||| ||||| || |||| ||||||||||||| |||||||||| |||||  |||||||||| |    
T  7873744 accaaaacaagcaaaatctaaagcaccacggccaccg-cgtgaacaa-ccacaaccaccacgatccttatgacgacaaaccatccgaaagttcgttgaag 7873647  T
Q  157 gaggattaatcgtgaatgaacgaga 181  Q
     |||||||||||| |||||| ||||    
T  7873646 aaggattaatcgtaaatgaaagaga 7873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 42049044 - 42049104
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaa 172  Q
    |||||||||||||||||||  |||||||||| |||| ||  || |||||||||||||||||    
T  42049044 accacgatccttacgacgaggaacgatccggaagttacgaagaaggaggattaatcgtgaa 42049104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 57583 - 57453
Alignment:
Q  62 aaacaagcaaaatctgaagc-ccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggagg 160  Q
    |||||||||||||| ||||| ||| |||| || |||  ||||| || |||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  57583 aaacaagcaaaatccgaagcaccacggccaccagcgcgaacaa-ccacaaccaccacgatccttacgacgacaaacgatccgggagtttgttgaaggagg 57485  T
Q  161 attaatcgtgaatgaacgagataccaccacac 192  Q
    |||||||||||| ||| |||||| | ||||||    
T  57484 attaatcgtgaaagaaagagatatcgccacac 57453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 36264 - 36173
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacct 194  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| | |||||||| ||||||||    
T  36264 aaccacaaccaccacgatccttacgacgacaaacgatccaggagttcgttgaaggaggattaatcatgaatggaagagataccgccacacct 36173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 20702453 - 20702607
Alignment:
Q  114 ccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacctacaaccaccggaaacggaa 213  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||  |||| ||||||||||| || |   ||||| ||||     
T  20702453 ccacgatccttacgataacaaacgatccgggagttcgttgaaggaggattaatcatgaatgaaatagatgccaccacacctgcagctgtcggaaccggat 20702552  T
Q  214 cacacctaacgactccacaattcacccccttcacaccacacattcgtcaccatcacc 270  Q
    ||||| || |||| |||||  |  ||||||||||||||||| | |||||||| ||||    
T  20702553 cacacatatcgacaccacacat--cccccttcacaccacacgtccgtcaccaccacc 20702607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 38640089 - 38640209
Alignment:
Q  62 aaacaagcaaaatctgaagc-ccatggccgccggcgtaaacaaaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggagg 160  Q
    |||||||||||| ||||||| ||| | || ||||||  ||||| || |||| ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  38640089 aaacaagcaaaaactgaagcaccaggcccaccggcgcgaacaa-ccacaaccaccacgatccttacgacgacaaacgattcgggagttcgttgaaggagg 38640187  T
Q  161 attaatcgtgaatgaacgagat 182  Q
    ||||||| |||||||| |||||    
T  38640188 attaatcatgaatgaaagagat 38640209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 53814155 - 53814222
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtg 170  Q
    |||| |||| |||||||||||||||||||| ||| ||||| |||| |||||| ||||||| |||||||    
T  53814155 aaccacaaccaccacgatccttacgacgacgaacaatccgagagtgcgttgaaggaggatcaatcgtg 53814222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 1798914 - 1798854
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaa 172  Q
    |||||||||||||||| ||| ||||||||||||||| ||  || |||||||||||||||||    
T  1798914 accacgatccttacgaagacgaacgatccgggagttgcgaagaaggaggattaatcgtgaa 1798854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 10388331 - 10388271
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaa 172  Q
    |||| ||||||||||||||| ||||||||||||||| ||  || ||||||||||| |||||    
T  10388331 accatgatccttacgacgacgaacgatccgggagttgcgaagaaggaggattaattgtgaa 10388271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 14193508 - 14193424
Alignment:
Q  108 caacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacac 192  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||| | | ||||||||||||||| | |||||||||||||||    
T  14193508 caaccaccacgatccttacgacgacaaacgatccgggatctcgttgaagtatgattaatcgtgaatggaagagataccaccacac 14193424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 40024152 - 40024211
Alignment:
Q  115 cacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatg 174  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  40024152 cacgatccttacgacgacaaacgatccgagagtttgttgaaggaggattaatcatgaatg 40024211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 25647253 - 25647167
Alignment:
Q  108 caacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacacct 194  Q
    |||| |||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| |||||| | |||||| | ||||||||    
T  25647253 caaccaccacggtccttacgatgacaaacgatccgggagtccgttgaaggatgattaatcatgaatggaagagatatcgccacacct 25647167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 37122881 - 37122807
Alignment:
Q  118 gatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagataccaccacac 192  Q
    ||||||||||||||||||||||  |||||||||||   |||||||||||| |||||||| |||||  ||||||||    
T  37122881 gatccttacgacgacaaacgatatgggagttcgttccaggaggattaatcatgaatgaaagagatgtcaccacac 37122807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 47235122 - 47235048
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagtt-cgttgagggaggattaatcgtgaatgaa 176  Q
    |||| |||| |||||||||||||| || || ||||| ||| ||||| |||||| ||||||||||||||| |||||    
T  47235122 aaccacaaccaccacgatccttacaacaacgaacgacccgagagttgcgttgaaggaggattaatcgtggatgaa 47235048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 3477815 - 3477752
Alignment:
Q  113 accacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaa 176  Q
    |||||||||||||||| ||||||||| || |||||||||||| |||||||||||||| ||||||    
T  3477815 accacgatccttacgatgacaaacgagccaggagttcgttgaaggaggattaatcgtaaatgaa 3477752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 34389456 - 34389397
Alignment:
Q  115 cacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatg 174  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||||    
T  34389456 cacgatccttacgacgacaaacgatccggaagtttgttgaaggaggattaatcatgaatg 34389397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 42533940 - 42534004
Alignment:
Q  103 aaccccaacaaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatc 167  Q
    |||| |||| ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||||    
T  42533940 aaccacaaccaccacgatccttacgacgacaaacgattcggaagttcgttgaaagaggattaatc 42534004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University