View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6893_high_2 (Length: 376)

Name: NF6893_high_2
Description: NF6893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6893_high_2
NF6893_high_2
[»] chr6 (7 HSPs)
chr6 (23-310)||(28734630-28734903)
chr6 (23-205)||(28711253-28711435)
chr6 (91-184)||(28711207-28711300)
chr6 (152-218)||(33011207-33011273)
chr6 (155-195)||(32683435-32683475)
chr6 (155-195)||(32685145-32685185)
chr6 (152-199)||(33010872-33010919)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 28734630 - 28734903
Alignment:
Q  23 ttacagccgaagcacctgaagttccaaaccagcaggagattgaagcttccatacattacattgaagaggatattgagaatttgaaagctcaatttcgaaa 122  Q
    |||| ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734630 ttactgccgaggtacctcaagttccaaaccagcaagagattgaagcttccatacattacattgaagaggatattgagaatttgaaagctcaatttcgaaa 28734729  T
Q  123 gaggacgggtaaagttacagccgatgcacctgaagttcgaaaccagcaggagattgaagcttaagatgaaagacatcgaaaatgtatatgtcagactcag 222  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||| ||||||| ||||| ||||||||||||      ||||    
T  28734730 gaggacgggtaaagttacagccgagggacctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaatgtatatg------tcag 28734823  T
Q  223 acctcttataatgaagtaatgaagcatgttaaatgctgtaacaaaacttagattatgttattcaagagcaggtttaatttatttttgt 310  Q
    ||||||||         |||||||||||||||||| || ||||||  |||| |||||||||||||||| |||||||||||| ||||||    
T  28734824 acctctta--------caatgaagcatgttaaatgttgcaacaaagattagtttatgttattcaagagtaggtttaatttagttttgt 28734903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 28711253 - 28711435
Alignment:
Q  23 ttacagccgaagcacctgaagttccaaaccagcaggagattgaagcttccatacattacattgaagaggatattgagaatttgaaagctcaatttcgaaa 122  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28711253 ttacagccgaggcacctgaagttccaaaccagcaggagattgaagcttccatacattacattgaagaggatattgagaatttgaaagctaaatttcgaaa 28711352  T
Q  123 gaggacgggtaaagttacagccgatgcacctgaagttcgaaaccagcaggagattgaagcttaagatgaaagacatcgaaaat 205  Q
    |||||||| |||||||||  |||| ||||||||||||| |||||| |||||||||||||||||| |||||| ||||| |||||    
T  28711353 gaggacggataaagttactaccgaggcacctgaagttccaaaccaacaggagattgaagcttaacatgaaaaacatcaaaaat 28711435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 28711207 - 28711300
Alignment:
Q  91 gatattgagaatttgaaagctcaatttcgaaagaggacgggtaaagttacagccgatgcacctgaagttcgaaaccagcaggagattgaagctt 184  Q
    |||||||||||||||||||||| | |||||||||||| || ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  28711207 gatattgagaatttgaaagctcgacttcgaaagaggatggataatgttacagccgaggcacctgaagttccaaaccagcaggagattgaagctt 28711300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 33011207 - 33011273
Alignment:
Q  152 ctgaagttcgaaaccagcaggagattgaagcttaagatgaaagacatcgaaaatgtatatgtcagac 218  Q
    ||||||||| ||||||||||||||  |||| |||||| |||||| ||| ||||| ||||||||||||    
T  33011207 ctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaatatatatgtcagac 33011273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 32683435 - 32683475
Alignment:
Q  155 aagttcgaaaccagcaggagattgaagcttaagatgaaaga 195  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  32683435 aagttccaaaccagcaggagaatgaagcttaagatgaaaga 32683475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 32685145 - 32685185
Alignment:
Q  155 aagttcgaaaccagcaggagattgaagcttaagatgaaaga 195  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  32685145 aagttccaaaccagcaggagaatgaagcttaagatgaaaga 32685185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 33010919 - 33010872
Alignment:
Q  152 ctgaagttcgaaaccagcaggagattgaagcttaagatgaaagacatc 199  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||||    
T  33010919 ctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatc 33010872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University