View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6893_low_1 (Length: 436)

Name: NF6893_low_1
Description: NF6893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6893_low_1
NF6893_low_1
[»] chr4 (3 HSPs)
chr4 (1-421)||(3677962-3678384)
chr4 (291-395)||(26558308-26558412)
chr4 (17-73)||(27112396-27112452)
[»] chr6 (2 HSPs)
chr6 (27-74)||(1932722-1932769)
chr6 (17-73)||(2477270-2477326)
[»] chr3 (2 HSPs)
chr3 (21-72)||(48308084-48308135)
chr3 (21-73)||(9245949-9246002)
[»] chr1 (2 HSPs)
chr1 (28-67)||(49416314-49416353)
chr1 (20-73)||(6871262-6871315)
[»] chr7 (2 HSPs)
chr7 (25-66)||(7879048-7879089)
chr7 (25-73)||(20601867-20601915)
[»] chr5 (1 HSPs)
chr5 (32-73)||(37322397-37322438)
[»] chr2 (2 HSPs)
chr2 (25-66)||(41508140-41508181)
chr2 (25-73)||(25726927-25726975)
[»] chr8 (2 HSPs)
chr8 (25-73)||(13380482-13380530)
chr8 (301-421)||(27827681-27827801)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 3678384 - 3677962
Alignment:
Q  1 tcatggtaataatttagatgaataagtaaatattaatttaacaactaactgctaacatttatcatttaaaaaattaggtatacttttaagtttttatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3678384 tcatggtaataatttagatgaataagtaaatattaatttaacaactaattgctaacatttatcatttaaaaaattaggtatacttttaagtttttatcat 3678285  T
Q  101 aaagcatggcatccttgaaatgctctaaggatctaggtaaaaaatcaacaagagta--accttgtattcatcctcaaggtttaccttaatgttttccaaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  3678284 aaagcatggcatccttgaaatgctctaaggatctaggtaaaaaatcaacaagagtataaccttgtattcatcctcaaggttcaccttaatgttttccaaa 3678185  T
Q  199 tcattaggtttttcttgaactccatcaatatctctatagttttcgactctaccatcctaaatgagtagagttgttttatgaatgctctaggtaaggattt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3678184 tcattaggtttttcttgaactccatcaatatctctatagttttcgactctaccatcctaaatgagtagagttgttttatgaatgttctaggtaaggattt 3678085  T
Q  299 gctcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaa 398  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3678084 ggtcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaa 3677985  T
Q  399 cttatatccttgtccaccatctc 421  Q
    |||||||||||||||||||||||    
T  3677984 cttatatccttgtccaccatctc 3677962  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 26558412 - 26558308
Alignment:
Q  291 aaggatttgctcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaata 390  Q
    |||||| || |||||||||||||||||| | ||| ||| |||   ||||||||||  |||| |||||||||  | | |||| |||||| ||||||||| |    
T  26558412 aaggatatggtcatatacaacgactccaactttgaccatatccatgccgcggttggttcctttgcgacatcccttaaaactttatcctcgaggcacaaga 26558313  T
Q  391 caatg 395  Q
    |||||    
T  26558312 caatg 26558308  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 27112452 - 27112396
Alignment:
Q  17 gatgaataagtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    |||||| |||||||||||||| |||||| ||| | ||||||||| ||||| ||||||    
T  27112452 gatgaaaaagtaaatattaatctaacaattaattactaacatttgtcattaaaaaaa 27112396  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 1932769 - 1932722
Alignment:
Q  27 taaatattaatttaacaactaactgctaacatttatcatttaaaaaat 74  Q
    ||||||||||||||||||||||| ||||| |||| ||||| |||||||    
T  1932769 taaatattaatttaacaactaacggctaatatttttcattaaaaaaat 1932722  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 2477270 - 2477326
Alignment:
Q  17 gatgaataagtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    |||||| |||||||||||||| |||||| ||| | ||||||||| ||||| ||||||    
T  2477270 gatgaaaaagtaaatattaatctaacaattaattactaacatttgtcattaaaaaaa 2477326  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 48308135 - 48308084
Alignment:
Q  21 aataagtaaatattaatttaacaactaactgctaacatttatcatttaaaaa 72  Q
    ||||| ||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  48308135 aataattaaatattaatctaacaactaactactaacatttgtcattaaaaaa 48308084  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 9245949 - 9246002
Alignment:
Q  21 aataagtaaatattaatttaacaa-ctaactgctaacatttatcatttaaaaaa 73  Q
    ||||||| ||||||||| |||||| |||||| |||||||||| |||||||||||    
T  9245949 aataagttaatattaatctaacaaactaactactaacatttaccatttaaaaaa 9246002  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 49416314 - 49416353
Alignment:
Q  28 aaatattaatttaacaactaactgctaacatttatcattt 67  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  49416314 aaatattaatttaacaactaattactaacatttatcattt 49416353  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 6871262 - 6871315
Alignment:
Q  20 gaataagtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    ||||||||| ||| |||| ||| |||||||| ||||||||| ||||||||||||    
T  6871262 gaataagtatatactaatctaataactaactactaacatttgtcatttaaaaaa 6871315  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7879089 - 7879048
Alignment:
Q  25 agtaaatattaatttaacaactaactgctaacatttatcatt 66  Q
    ||||||||||||| |||||||||| ||||||||||| |||||    
T  7879089 agtaaatattaatctaacaactaattgctaacatttgtcatt 7879048  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 20601867 - 20601915
Alignment:
Q  25 agtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    ||||||||||||||||||||||||||  |||||||| | ||| ||||||    
T  20601867 agtaaatattaatttaacaactaactattaacattttttattaaaaaaa 20601915  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 37322438 - 37322397
Alignment:
Q  32 attaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    ||||||||||||||||| | ||||||||||||||| ||||||    
T  37322438 attaatttaacaactaattactaacatttatcattaaaaaaa 37322397  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 41508181 - 41508140
Alignment:
Q  25 agtaaatattaatttaacaactaactgctaacatttatcatt 66  Q
    ||||||||||||| |||||||||| ||||||||||| |||||    
T  41508181 agtaaatattaatataacaactaattgctaacatttgtcatt 41508140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 25726975 - 25726927
Alignment:
Q  25 agtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    ||||||||||||| |||||| ||||| ||||||||| ||||| ||||||    
T  25726975 agtaaatattaatctaacaattaactactaacatttttcattaaaaaaa 25726927  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 13380482 - 13380530
Alignment:
Q  25 agtaaatattaatttaacaactaactgctaacatttatcatttaaaaaa 73  Q
    ||||||||||||| |||||||||||| ||| ||||| ||||| ||||||    
T  13380482 agtaaatattaatctaacaactaactactagcatttgtcattcaaaaaa 13380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 27827801 - 27827681
Alignment:
Q  301 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 400  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  27827801 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 27827702  T
Q  401 tatatccttgtccaccatctc 421  Q
      || ||||||||||||||||    
T  27827701 cctagccttgtccaccatctc 27827681  T

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