View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6893_low_3 (Length: 287)
Name: NF6893_low_3
Description: NF6893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6893_low_3 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 75078 - 75342
Alignment:
| Q |
11 |
gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat |
110 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
75078 |
gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactggtct |
75177 |
T |
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| Q |
111 |
gtacggaagagactgtgtaggtggcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatcagtattt |
210 |
Q |
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| | |||||||| |||| ||||||||||||||||| | || ||||||||||| | ||||||| |||||||||| |||||||||||||| ||||| ||| |
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| T |
75178 |
ggaaggaagagaatgtgcaggtggcttgaatttacctatgcacatagcagatttcaccagcttccttttcttattcccatttacccccacttcagtgttt |
75277 |
T |
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| Q |
211 |
gttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgt |
275 |
Q |
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| T |
75278 |
gttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgt |
75342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 21974025 - 21974295
Alignment:
| Q |
11 |
gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
21974025 |
gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct |
21974124 |
T |
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| Q |
111 |
gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca |
204 |
Q |
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| T |
21974125 |
ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca |
21974224 |
T |
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| Q |
205 |
gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgt |
275 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21974225 |
gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgt |
21974295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 44480153 - 44479883
Alignment:
| Q |
11 |
gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
44480153 |
gaacctgtgcagtggggttgacagttgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct |
44480054 |
T |
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| Q |
111 |
gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca |
204 |
Q |
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| | |||||||| |||| ||||| |||||||||||| ||| ||||||||||||| ||||||| |||||||||| |||||||||||||| ||| |
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| T |
44480053 |
ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattcccatttacccccacttca |
44479954 |
T |
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| Q |
205 |
gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgt |
275 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44479953 |
gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttgagttgatgt |
44479883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 32620539 - 32620269
Alignment:
| Q |
11 |
gaacctgtgcagtggggttgacagttgtggatgaagttggtttcatgtaggttgacataaatgcaactgtaggtttggtgactggagctttaactagtat |
110 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
32620539 |
gaacctgtgcagtggggttgacagctgtggatgaatttggtttcatgtaggttgacataaatgcaactgtaggtttggtgattggagctttaactggtct |
32620440 |
T |
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| Q |
111 |
gtacggaagagactgtgtaggtg------gcttgaatttacttttgttgatagcagatttaatcagcttcattttcttattaccatttacccccacatca |
204 |
Q |
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| | |||||||| |||| ||||| |||||||||||| ||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||| |
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| T |
32620439 |
ggaaggaagagaatgtgcaggtgcaggtggcttgaatttaccattgcacatagcagatttaaccagcttccttttcttattctcatttacccccacttca |
32620340 |
T |
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| Q |
205 |
gtatttgttgatccagtaccaacactataactgccttcagtaacttctgtttgatttccttgagttgatgt |
275 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32620339 |
gtgtttgttgatccagtaccaacactaaaactgccttcagtaacttctgtttgatttccttaagttgatgt |
32620269 |
T |
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