View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6893_low_5 (Length: 243)
Name: NF6893_low_5
Description: NF6893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6893_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43289811 - 43289594
Alignment:
| Q |
1 |
atttgaagaagatgaaagatttttccttcatagccttcataggagtttctattagtactcatcatgttgttattttctctacttatgatgatttttccct |
100 |
Q |
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| T |
43289811 |
atttgaagaagatgaaagatttttccttcatagccttcataggagtttctattagtactcatcatgttgttattttctctacttatgatgatttttccct |
43289712 |
T |
|
| Q |
101 |
tcttttttctttctctattaactgaaaggctaagattcagaagctcatcttcttctgaatcagcttccatatctgaaaaaaggagagaaatataatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289711 |
tcttttttctttctctattaactgaaaggctaagattcagaagctcatcttcttctgaatcagcttccatatctgaaaaaaggagagaaatataatataa |
43289612 |
T |
|
| Q |
201 |
tctttgttttcgtgtgtg |
218 |
Q |
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|||||||||| ||||||| |
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| T |
43289611 |
tctttgtttttgtgtgtg |
43289594 |
T |
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