View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6894_low_1 (Length: 418)
Name: NF6894_low_1
Description: NF6894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6894_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 2 - 410
Target Start/End: Complemental strand, 12278400 - 12277995
Alignment:
| Q |
2 |
caagcaatggaaaagagacttgattttctctattttcaacacttttgaagcaaggcaaattactagtattcctttatctttcagactcccagaagataca |
101 |
Q |
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| T |
12278400 |
caagcaatggaaaagagacttgattttctctattttcaacacttttgaagcaaggcaaattactagtattcctttatctttcagactcccagaagataca |
12278301 |
T |
|
| Q |
102 |
tttatatgggatggagagaaagatggaaagtactcagtccggtcagcctaccacctgttgggagaggaaagaaggaaagaattaccagcttcatctcata |
201 |
Q |
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| T |
12278300 |
tttatatgggatggagagaaagatggaaagtactcagtccggtcagcttaccacctgttgggagaggaaagaaggaaagaattaccagcttcatct---a |
12278204 |
T |
|
| Q |
202 |
ctacaaatgacaaaccgtggataggaatttggagtatcaacctcccaaatagggtcaataattttctttggagaacggcaaaaaatatcttacctacaag |
301 |
Q |
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| T |
12278203 |
ctacaaatgacaaaccgtggaaaggaatttggagtatcaacctcccaaatagggtcaataattttctttggagaacggcaaaaaatatcttacctacaag |
12278104 |
T |
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| Q |
302 |
aggaaatctgtgtaaaaaaggaattaaaattgaccctgtgtgccggctttgcaaccttgaaccggaaacatcagaacacctcttcatgcgatgtaacttt |
401 |
Q |
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| T |
12278103 |
aggaaacctgtgtaaaaaaggaattaaaattgactctgtgtgcccgctttgcaaccttgaaccggaaacatcagaacacctcttcatgcgatgtaacttt |
12278004 |
T |
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| Q |
402 |
gcacaggtt |
410 |
Q |
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| T |
12278003 |
gcacaggtt |
12277995 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 38263823 - 38263876
Alignment:
| Q |
281 |
aaaaaatatcttacctacaagaggaaatctgtgtaaaaaaggaattaaaattga |
334 |
Q |
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| T |
38263823 |
aaaaaacatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattga |
38263876 |
T |
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