View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6894_low_11 (Length: 229)
Name: NF6894_low_11
Description: NF6894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6894_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 1793812 - 1794033
Alignment:
| Q |
6 |
agtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgccctttttgtacgaacctccccccttt |
105 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1793812 |
agtagagtcctttaa-tgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgtcctttttgtacgaacctccccccttt |
1793910 |
T |
|
| Q |
106 |
gatttttggatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttccg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1793911 |
gatttttggatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttcct |
1794010 |
T |
|
| Q |
204 |
cctttgatacatgaatttgtaac |
226 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
1794011 |
cctttgatccatgaatttgtaac |
1794033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2007649 - 2007708
Alignment:
| Q |
5 |
cagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
65 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
2007649 |
cagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
62 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
138 |
Q |
| |
|
|||||||||||||| | ||| | | ||| ||||| ||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 20954211 - 20954279
Alignment:
| Q |
158 |
gagttttaatatgctctatgtctctcttatgcatactatctttccgcctttgatacatgaatttgtaac |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||||| |
|
|
| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttccctctttgatccatggacttgtaac |
20954279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 20935971 - 20936038
Alignment:
| Q |
158 |
gagttttaatatgctctatgtctctcttatgcatactatctttccgcctttgatacatgaatttgtaac |
226 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcccgctttgatccatggatttgtaac |
20936038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 39275112 - 39275179
Alignment:
| Q |
158 |
gagttttaatatgctctatgtctctcttatgcatactatctttccgcctttgatacatgaatttgtaa |
225 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcccgctttgatccatgaatttgtaa |
39275179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University