View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6894_low_2 (Length: 376)
Name: NF6894_low_2
Description: NF6894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6894_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 39950630 - 39950987
Alignment:
| Q |
18 |
gatctagccataacctaaaacaatataaacattgtgttatttaaagcactgacaaatcaaccatttccctcattatattagacaaacagaatcatagcag |
117 |
Q |
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| T |
39950630 |
gatctagccataacctaaaacaatataaacattttgttatttaaagcactgacaaatcaaccatttccctcattatattagacaaacagaatcatagcag |
39950729 |
T |
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| Q |
118 |
aatgcagaaacagaaacggtttcaatcgaagatgttattttgcatataggaaatatgaagcacctgaatcttgggaatgagttcaaacaattcctcttga |
217 |
Q |
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| T |
39950730 |
aatgcagaaacagaaacagtttcaattgaagatgttattttgcatataggaaatatgaagcacctgaatcttgggaatgagttcaaacaattcctcttga |
39950829 |
T |
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| Q |
218 |
gtcttctctctgaagtcaggaccttcaatagctatgccatcatctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctg |
317 |
Q |
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| T |
39950830 |
gtcttctctctgaagtcaggaccttcaatagctatgccatcatctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctg |
39950929 |
T |
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| Q |
318 |
taaccattctcaccatgattccagccgaacgacactctgcaacagactgcttaacacc |
375 |
Q |
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| T |
39950930 |
taaccattctcaccacgattccagccgaacgacactctgcaacagactgcttaacacc |
39950987 |
T |
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Back To:
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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 174 - 351
Target Start/End: Complemental strand, 5419992 - 5419815
Alignment:
| Q |
174 |
gaagcacctgaatcttgggaatgagttcaaacaattcctcttgagtcttctctctgaagtcaggaccttcaatagctatgccatcatctgttaaaattcc |
273 |
Q |
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| T |
5419992 |
gaagtacctgaattttgggaatcagttcaagcaactcttccaaactcttctctctgaattcaggaccttcaatggctatgccatcatctgttaaaatccc |
5419893 |
T |
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| Q |
274 |
acattccctagctatagcctttgcagtattaatattatctcctgtaaccattctcaccatgattccagccgaacgaca |
351 |
Q |
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| T |
5419892 |
acattccctagctatagcctttgcagtattaatattgtcacctgtaaccattcttactgttattccagctgaacgaca |
5419815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 47488400 - 47488334
Alignment:
| Q |
258 |
catctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctgtaaccat |
324 |
Q |
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| T |
47488400 |
catctgttaaaattccacattctctagcaatcgcctttgcagtatttatgttgtctccggtaaccat |
47488334 |
T |
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