View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6894_low_5 (Length: 283)
Name: NF6894_low_5
Description: NF6894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6894_low_5 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2572608 - 2572890
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572608 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
2572707 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572708 |
taccaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
2572807 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
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|||||||||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2572808 |
tcaacttcccccaagactttctctataatttcaccttccatgttttcagaatctatctttggaactctttttatcacttccat |
2572890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2448732 - 2448450
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
2448732 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccactttctcc |
2448633 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2448632 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaat |
2448533 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
2448532 |
tcaacttcccccaagactttctctagaatttcaccttccatattttcagaatctatttttggaactctttttatcatttccat |
2448450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2432865 - 2432583
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2432865 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaaccgttgattttcctgaaccacttcctcc |
2432766 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2432765 |
tactaatgccactgtttttcctgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacattgttgaac |
2432666 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
2432665 |
tcaacttcccccaagactttctctataatttcaccttccatgttttcagaatctatcgttggaactctttttatcacttccat |
2432583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2586450 - 2586168
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2586450 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccacttcctcc |
2586351 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2586350 |
tactaatgccactgtttttcctgatggaacctttaagcaaaaatcttttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaat |
2586251 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
|||||||||||| | |||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2586250 |
tcaacttcccccgacactttctctataatttcaccttccatgttttcggaatcaatctttggaactctttttatcacttccat |
2586168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2645006 - 2645288
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
2645006 |
tatgaatggcaactccatcaagaagaatctctccacaaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccactttctcc |
2645105 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2645106 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttaaat |
2645205 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2645206 |
tcaacttctcctaaaactttctctagaatctctccttccatgttttcagaatcaatctttggaactctatttatcacatccat |
2645288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2677444 - 2677726
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677444 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccacttcctcc |
2677543 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677544 |
tactaatgcaaccgttttccctgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaac |
2677643 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
2677644 |
tcaacttcccctaagactttctctagaatttcaccttcgatgttttcagaatctatctttggaactctttttatcatttccat |
2677726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2620140 - 2619858
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620140 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
2620041 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620040 |
tactaatgcaaccgttttccctgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaat |
2619941 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
||||||| ||| | ||||||||||||||||| |||||||| |||| |||||| || ||||||||||| ||||||| |||||| |
|
|
| T |
2619940 |
tcaactttccctgacactttctctagaatttcaccttccatgtttttagaatctatttttggaactctatttatcatttccat |
2619858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2600186 - 2600456
Alignment:
| Q |
1 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600186 |
tatgaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcc |
2600285 |
T |
|
| Q |
101 |
tactaatgccactgtttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaac |
200 |
Q |
| |
|
||||||||| || ||||| ||||||||| | | |||| || |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2600286 |
tactaatgcaaccgttttccctgatggacc------------acactttaggaccacactttctggtcttgatggatacacaaattcaacattgttgaac |
2600373 |
T |
|
| Q |
201 |
tcaacttcccccaaaactttctctagaatttcgccttccatattttcagaatcaatctttggaactctttttatcacttccat |
283 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
2600374 |
tcaacttcccccaagactttctctagaatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccat |
2600456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 17872785 - 17872910
Alignment:
| Q |
4 |
gaatagcaactccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctac |
103 |
Q |
| |
|
||||||| |||||||||||| | ||||| ||||| |||||||||||||| | ||| || | |||| || |||||||| ||||||||||| | || || |
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|
| T |
17872785 |
gaatagctactccatcaagacgtatctcaccaccgattggatcataaaaccgttgcaataaagatatcacagttgatttccctgaaccactctcaccaac |
17872884 |
T |
|
| Q |
104 |
taatgccactgtttttcctgatggaa |
129 |
Q |
| |
|
||||||| |||||| |||| ||||| |
|
|
| T |
17872885 |
caatgccattgttttccctgctggaa |
17872910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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