View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6894_low_9 (Length: 245)
Name: NF6894_low_9
Description: NF6894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6894_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 39951288 - 39951050
Alignment:
| Q |
7 |
aagagtggcagtagttgtggagcaacctgatggaagtttaagagctcattgcaaaggtgcttctgaaataattctggcagcttgtgacaaagttattgac |
106 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951288 |
aagaatgggagtagttgtggagcaacctgatggaagtgtaagagctcattgcaaaggtgcttctgaaataattctggcagcttgtgacaaagttattgac |
39951189 |
T |
|
| Q |
107 |
ttgaacggcgatgttgtttctcttgatggagaatcaactaattatcttaacagtattatcaaccagtttgctaatgaggcacttagaactctttgccttg |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951188 |
ttgaacggcgatgttgttgctcttgatggagaatcaactaattatcttaacagtattatcaaccagtttgctaatgaggcacttagaactctttgccttg |
39951089 |
T |
|
| Q |
207 |
cctatatggaattggaaaacgggtttgctgctgaagatc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951088 |
cctatatggaattggaaaacgggtttgctgctgaagatc |
39951050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 5419520 - 5419726
Alignment:
| Q |
37 |
tggaagtttaagagctcattgcaaaggtgcttctgaaataattctggcagcttgtgacaaagttattgacttgaacggcgatgttgtttctcttgatgga |
136 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||| |||| || ||||||||||||||| | | | |||||||| ||||| | ||||||| | |
|
|
| T |
5419520 |
tggaggtttaagagctcactgtaaaggtgcttctgaaatagttcttgctgcttgtgacaaagttctcaattcaaacggcgaggttgtcccacttgatgaa |
5419619 |
T |
|
| Q |
137 |
gaatcaactaattatcttaacagtattatcaaccagtttgctaatgaggcacttagaactctttgccttgcctatatggaattggaaaacgggtttgctg |
236 |
Q |
| |
|
|||||||||||| |||| | | || || ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
5419620 |
gaatcaactaatcatctcacgaatacaataaaccagtttgccaatgaggcacttagaactttatgccttgcctatatggaattggaaaatgggttctctg |
5419719 |
T |
|
| Q |
237 |
ctgaaga |
243 |
Q |
| |
|
||||||| |
|
|
| T |
5419720 |
ctgaaga |
5419726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University