View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6895_high_1 (Length: 511)

Name: NF6895_high_1
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6895_high_1
NF6895_high_1
[»] chr6 (4 HSPs)
chr6 (153-493)||(17770653-17770993)
chr6 (401-489)||(1575690-1575777)
chr6 (41-89)||(17771057-17771105)
chr6 (426-484)||(8331699-8331757)
[»] chr3 (3 HSPs)
chr3 (235-386)||(5391726-5391869)
chr3 (323-423)||(5396075-5396175)
chr3 (435-493)||(5396169-5396227)
[»] chr8 (2 HSPs)
chr8 (200-269)||(41066752-41066821)
chr8 (275-334)||(41066667-41066729)
[»] chr7 (1 HSPs)
chr7 (401-489)||(15740599-15740686)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 153 - 493
Target Start/End: Complemental strand, 17770993 - 17770653
Alignment:
Q  153 ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattaattgtttcaactttctgttttaccacatcctttctttctgttatata 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||    
T  17770993 ctgtcagccgaaatcaaaaggttacaagctcaaaaagacaccatttatcattatttgtttcaactttctattttaccacatcctttctttcttttatata 17770894  T
Q  253 aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctctaacttttccttattgttc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770893 aatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctctaacttttccttattgttc 17770794  T
Q  353 acatcacattgttaacatttaaactatatattatcaccaaaattattcagggtttgacaagggactttggtggctttggtagctttggtatccttctcaa 452  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17770793 acatcacattgttaacattcaaactatatattatcaccaaaattattcagggtttgacaatggactttggtggctttggtagctttggtatccttctcaa 17770694  T
Q  453 agggtatatgggaaaattaagttaagtcagtatcttcgatg 493  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17770693 agggtatatgggaaaattaagttaagtcagtatcttcgatg 17770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 489
Target Start/End: Original strand, 1575690 - 1575777
Alignment:
Q  401 agggtttgacaagggactttggtggctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttc 489  Q
    |||||||| || |||||||||||||||| |||||||||| |||||||||||||| | | |||||||||| |||||||| ||||||||||    
T  1575690 agggtttggcaggggactttggtggcttaggtagctttg-tatccttctcaaagagcaaatgggaaaatcaagttaagccagtatcttc 1575777  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 17771105 - 17771057
Alignment:
Q  41 ccaaaaccaaccagcaccctgcagaaagccatcgctgtccgtcccaaca 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17771105 ccaaaaccaaccagcaccctgcagaaagccatcgttgtccgtcccaaca 17771057  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 8331699 - 8331757
Alignment:
Q  426 ctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagta 484  Q
    |||||||||||||||||||||| ||| |||| | ||||| |||| ||||||| ||||||    
T  8331699 ctttggtagctttggtatccttgtcagagggcaaatgggtaaatcaagttaaatcagta 8331757  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 235 - 386
Target Start/End: Original strand, 5391726 - 5391869
Alignment:
Q  235 ctttctttctgttatataaatcacttttcctcacttgcttctctcttaaatctcttcaccctctatcacaaccaatctcttattaacccttcacttctct 334  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||    
T  5391726 ctttctttcttttatataaatcacttttcct--------tctctcttaaatcaattcaccctctatcacaaccaatctcttcttaagccttcacttctct 5391817  T
Q  335 aacttttccttattgttcacatcacattgttaacatttaaactatatattat 386  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  5391818 aacttttctttattgttcacatcacattgttaacattcaaactatatgttat 5391869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 323 - 423
Target Start/End: Original strand, 5396075 - 5396175
Alignment:
Q  323 cttcacttctctaacttttccttattgttcacatcacattgttaacatttaaactatatattatcaccaaaattattcagggtttgacaagggactttgg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |  ||||||||||    
T  5396075 cttcacttctctaacttttccttattgttcacatcacattgttaacattcaaactatattttatcaccataattattcagggtttggccggggactttgg 5396174  T
Q  423 t 423  Q
    |    
T  5396175 t 5396175  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 5396169 - 5396227
Alignment:
Q  435 ctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttcgatg 493  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  5396169 ctttggtatccttctcaaagggtaaatgggaaaatcaagttaaatcagtatcttcgatg 5396227  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 41066821 - 41066752
Alignment:
Q  200 tcattaattgtttcaactttctgttttaccacatcctttctttctgttatataaatcacttttcctcact 269  Q
    |||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  41066821 tcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctcact 41066752  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 41066729 - 41066667
Alignment:
Q  275 ctctcttaaatctcttcaccctctatcacaaccaatc---tcttattaacccttcacttctct 334  Q
    |||||||||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||    
T  41066729 ctctcttaaatctcttcaccctctatcacagccaatctcttcttaataacccttcacttctct 41066667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 489
Target Start/End: Complemental strand, 15740686 - 15740599
Alignment:
Q  401 agggtttgacaagggactttggtggctttggtagctttggtatccttctcaaagggtatatgggaaaattaagttaagtcagtatcttc 489  Q
    |||||||| || |||||||||||||||| |||||||||| |||||||||||||| | | |||||||||| |||||||| ||||||||||    
T  15740686 agggtttggcaggggactttggtggcttaggtagctttg-tatccttctcaaagagcaaatgggaaaatcaagttaagccagtatcttc 15740599  T

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