View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6895_high_4 (Length: 397)
Name: NF6895_high_4
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 183 - 379
Target Start/End: Original strand, 51997153 - 51997349
Alignment:
| Q |
183 |
aattggttggtaatacctcataatgtatgaggacgaaaccctaaacagacatgatggatataggtttagaggtgcaagaaaatgaggtagtaaatcggca |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51997153 |
aattggttggtaattcctcataatgtatgaggacgaaacactaaacagacatgatggatatatgattagaggtgcaagaaaatgaggtagtaaatcggca |
51997252 |
T |
|
| Q |
283 |
catgtgagtaataaaacgatattattattgactaaaccaacaatcatttccatttttcaaacaaaataaattagaaggctttacgtgacatgagttt |
379 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51997253 |
catgtgagtaataaaacgacattattattgactaaaccaacaatcatttccatttttcaaacaaaataaattagaaggctttacgtgacatgagttt |
51997349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 51996910 - 51997057
Alignment:
| Q |
15 |
catcatatttgacagtattgaataccttgttttacagttagcatgcatgaggttataatttaaaatctcatgagatatctcaataatggatatctccatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51996910 |
catcatatttgacagtattgaatacctcgttttacagttagcatgcatgaggttataatttaaaatctcatgagatatctcaataatggatatctccatt |
51997009 |
T |
|
| Q |
115 |
aaaatatctcacacaaggtaaatttttcttccttactgctcttattaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51997010 |
aaaatatctcacacaaggtaaatttttcttccttactgctcttattaa |
51997057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University