View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6895_high_6 (Length: 250)
Name: NF6895_high_6
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_high_6 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 36287937 - 36288178
Alignment:
| Q |
9 |
tggtgttgaaccaactgaaagtccagttctgaatggaggaaagtcaggtgcttatatgattctgagtatttctttctggtcttcagtcttctaatgctaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287937 |
tggtgttgaaccaactgaaagtccagttctgaatggaggaaagtcaggtgcttatatgattctgagtatttctttctggtcttcagtcttctaatgctaa |
36288036 |
T |
|
| Q |
109 |
ttgcagtgtatgtgaatgtcgttgtatcacaaattcacaatataaaatgtccaaattttccagtagtctagagactatagatttttgttcttcatttgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288037 |
ttgcagtgtatgtgaatgtcgttgtatcacaaattcacaatataaaatgtccaaattttccagtagtctagagactatagatttttgttcttcatttgaa |
36288136 |
T |
|
| Q |
209 |
ttgttatatttagttttttgtttctctgtcatatataattgt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36288137 |
ttgttatatttagttttttgtttctctgtcaaatataattgt |
36288178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 36282001 - 36282084
Alignment:
| Q |
9 |
tggtgttgaaccaactgaaagtccagttctgaatggaggaaagtcaggtgcttatatgattctgagtatttctttctggtcttc |
92 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| |||||| || ||||||| || ||||||||||||||||||| |
|
|
| T |
36282001 |
tggtgtagaaccaactgaaagtgcagttctgaatggaggaaagccaggtgattttatgattttgtgtatttctttctggtcttc |
36282084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 36293509 - 36293557
Alignment:
| Q |
9 |
tggtgttgaaccaactgaaagtccagttctgaatggaggaaagtcaggt |
57 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
36293509 |
tggtgtagaaccaactgaaagtgcaattctgaatggaggaaagccaggt |
36293557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University