View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6895_low_2 (Length: 479)
Name: NF6895_low_2
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 126 - 464
Target Start/End: Complemental strand, 26656703 - 26656364
Alignment:
| Q |
126 |
gtgtccgacactaaaatgtgtcagtgataataggttgcaacaaaaatctttagatcaaatcatgaattataaactgttctc---aaattttgaaaagcat |
222 |
Q |
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| T |
26656703 |
gtgtccgacactaaaatgtgtcagtgataataggttgcaacaaaaatctttagatcaaatcatgaattaaaaattgttctcctcaaattttgaaaaacat |
26656604 |
T |
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| Q |
223 |
actctaaaaatgatttgatcgtacaataaacagaacaaaaacagcataaatgttcaatggaaacgaatgaagatataccagaacgtgaagtaattgatgt |
322 |
Q |
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| T |
26656603 |
actc--aaaatgatttgcacatacaataaacagaacaaaaacagcatgaatgttcaatgcaaaccaatgaagatataccagaacgtgaagtaattgatgt |
26656506 |
T |
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| Q |
323 |
cagtgcaaagttcctgagcctagtaatctcactgatggcattagccttcaaattatcaggaatcacgtctcatccaagcttttgaacattgttatttcca |
422 |
Q |
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| T |
26656505 |
cagtgcaaaattcctgagcctagtaatctcgctgatagcattagccttcaaattttcaggaatcgcgtctcttccaagcttttgaacattgttatttcca |
26656406 |
T |
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| Q |
423 |
atgctcctcaatgcattttcacatgcctattcaccaaacaat |
464 |
Q |
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| T |
26656405 |
atgcacctcaatgcattttcacatgcctattcaccaaacaat |
26656364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 271 - 462
Target Start/End: Complemental strand, 26643088 - 26642897
Alignment:
| Q |
271 |
aatgttcaatggaaacgaatgaagatataccagaacgtgaagtaattgatgtcagtgcaaagttcctgagcctagtaatctcactgatggcattagcctt |
370 |
Q |
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| T |
26643088 |
aatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagcctt |
26642989 |
T |
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| Q |
371 |
caaattatcaggaatcacgtctcatccaagcttttgaacattgttatttccaatgctcctcaatgcattttcacatgcctattcaccaaaca |
462 |
Q |
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| T |
26642988 |
caaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaaca |
26642897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 26656856 - 26656817
Alignment:
| Q |
19 |
acagaactttggcacaccatgttgaaacctattaagttcc |
58 |
Q |
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| T |
26656856 |
acagaattttggcacaccatgttgaaacctattaagttcc |
26656817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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