View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6895_low_3 (Length: 450)
Name: NF6895_low_3
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 276 - 446
Target Start/End: Complemental strand, 15751802 - 15751633
Alignment:
| Q |
276 |
gatgaaaaaatataaacaagatctactttaatttannnnnnnattaaattgacacccattgtaaaatagagaatttggattttatttttacaaaaagtat |
375 |
Q |
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| T |
15751802 |
gatgaaaaaatataaacaagatctactttaatttatttttttattaaattgacacccattgtaaaatagagaatttggattttatttttacaaaaagtat |
15751703 |
T |
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| Q |
376 |
aaattattttcacaacacaaaaatatggcttagaggcatacctggtagtattttgaaataaactccaaact |
446 |
Q |
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| T |
15751702 |
aaattattttcacaacacaaaaatatggcttaggggcata-ctggtagtattttgaaataaactccaaact |
15751633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 15752024 - 15751876
Alignment:
| Q |
45 |
ataatttatacttattagaaaaagggaaatattgtacaagttatcttattgattattagtatgtttcttatcttattattataaatgtaaagtgaaatat |
144 |
Q |
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| T |
15752024 |
ataatttgtacttattagaaaaagggaaatattgtacaagttatgttattgattattagtatgtttcttatcttactattataaatg-aaagtgaaatat |
15751926 |
T |
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| Q |
145 |
aatgttgctttgaaagtaaagcatgttgtattaattaaaggatctaattg |
194 |
Q |
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| T |
15751925 |
aatgttgctttgaaagtaaagcatgttgtattaattaaaggatctaattg |
15751876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 15752485 - 15752451
Alignment:
| Q |
19 |
acttccatcatttaccactcactcatataatttat |
53 |
Q |
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| T |
15752485 |
acttccatcatttaccactcactcatataatttat |
15752451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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