View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6895_low_5 (Length: 275)
Name: NF6895_low_5
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 9682285 - 9682011
Alignment:
| Q |
1 |
atcctccatatattccacaggtctttttccactcacaatttcaagaaccaatattccaaaaccatatatgtcgcatttttcggttatgttaaccgtgcgg |
100 |
Q |
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| T |
9682285 |
atcctccatatattccacaggtctttttccactcacaatttcaagaaccaatattccaaaaccatatatgtcgcatttttcggttatgttaaccgtgcgg |
9682186 |
T |
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| Q |
101 |
caagcgaattcaggagccgtgtatccgagtgcactttgaattttgctgctcaaaacacaatggtctagcattggtaaaagatttaccaaaccaaaatctc |
200 |
Q |
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| T |
9682185 |
caagcgaattcaggagccgtgtatccgagtgcactttgaattttgctgctcaaaacacaatggtctagcattggtaaaagattcaccaaaccaaaatctc |
9682086 |
T |
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| Q |
201 |
ctattttaggttcatcacaaacatcaatgaaaacattagtagatttcatattataatggatgatgtccatctcat |
275 |
Q |
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| T |
9682085 |
ctattttaggttcatcacaaacatcaatgaaaacattagtagatttcatattataatggattatgtccatttcat |
9682011 |
T |
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Back To:
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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 27377474 - 27377677
Alignment:
| Q |
1 |
atcctccatatattccacaggtctttttccactcacaatttcaagaaccaatattccaaaaccatatatgtcgcatttttcggttatgttaaccgtgcgg |
100 |
Q |
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||||||||| |||||||||||||||||||| |||| || || | || || || || ||||| || | ||||||||| |||||||| ||||| |||||| |
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| T |
27377474 |
atcctccatgtattccacaggtctttttcctgtcactatctccaaaatcaggatcccgaaaccgtacacgtcgcatttctcggttattttaactgtgcgg |
27377573 |
T |
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| Q |
101 |
caagcgaattcaggagccgtgtatccgagtgcactttgaattttgctgctcaaaacacaatggtctagcattggtaaaagatttaccaaaccaaaatctc |
200 |
Q |
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| T |
27377574 |
caagcaaactcgggtgccatgtatcctagcgcactttgaattttgctgcttaacacacaatggtccagcattggtaacagcttcaccaagccgaaatctc |
27377673 |
T |
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| Q |
201 |
ctat |
204 |
Q |
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|||| |
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| T |
27377674 |
ctat |
27377677 |
T |
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