View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6895_low_8 (Length: 243)
Name: NF6895_low_8
Description: NF6895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6895_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 63 - 243
Target Start/End: Complemental strand, 36288516 - 36288336
Alignment:
| Q |
63 |
gtctctatgtttaattaataaattttgtgttatatattaacaaattatgcaggtttcacttgggnnnnnnngaaagaaaagagagtctcatttgaaatga |
162 |
Q |
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| T |
36288516 |
gtctctatgtttaattaataaattttgtgttatatattaacaaattatgcaggtttcacttgggaaaaaaagaaagaaaagatagtctcatttgaaatga |
36288417 |
T |
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| Q |
163 |
aggaaaatatcatattctatatcgaaattgataattgaatactaatgtattggtgttgcgagctacctgaataacttcatc |
243 |
Q |
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| T |
36288416 |
aggaaaatatcatattctatattgaaattgataattgaatactaatgtattagtgttgcgagctacctgaataacttcatc |
36288336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 36293828 - 36293776
Alignment:
| Q |
191 |
tgataattgaatactaatgtattggtgttgcgagctacctgaataacttcatc |
243 |
Q |
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| T |
36293828 |
tgataattgaataccagtgtattagtgttgcaagctacctgaataacttcatc |
36293776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 36288558 - 36288527
Alignment:
| Q |
17 |
cattgttaatattcctcactgtcatcttctag |
48 |
Q |
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| T |
36288558 |
cattgttaatattcctcactgtcatcttctag |
36288527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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