View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6895_low_9 (Length: 235)

Name: NF6895_low_9

Description: NF6895

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6895_low_9

[»] chr1 (5 HSPs)

[»] scaffold0045 (1 HSPs)

[»] chr3 (2 HSPs)

[»] scaffold0510 (2 HSPs)

[»] chr7 (6 HSPs)

[»] chr6 (6 HSPs)

[»] chr5 (4 HSPs)

[»] chr8 (1 HSPs)

[»] chr2 (2 HSPs)

Alignment Details

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 5)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 160; E-Value: 2e-85

Query Start/End: Original strand, 14 - 201

Target Start/End: Original strand, 35087232 - 35087419

Alignment:

Q	14	ggacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccat	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35087232	ggacatcaactccggagggtaccctgcttgttgctgcatcaaatactgagaatgctagaaatatgtgttagcacggttagttgcctccagcatgttccat	35087331	T

Q	114	gtatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35087332	gtatgagtatggcactaatgttgccattatgcgtagctggcaaagtcgaaggcagccatggatggaatctgaaatggttcgggccctg	35087419	T

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Target: chr1; HSP #2

Raw Score: 75; E-Value: 1e-34

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 41302524 - 41302398

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41302524	gacatcacctccggtgggtaccctgcctgctgctgcatcaaatactgagactgctgaagatatgtattagcacggttagttgagtccagcatgttccatg	41302425	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	41302424	catgagtatggcactggtattgccatt	41302398	T

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Target: chr1; HSP #3

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 39056710 - 39056584

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39056710	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	39056611	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	39056610	tatgggtatggcactggtattgccatt	39056584	T

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Target: chr1; HSP #4

Raw Score: 59; E-Value: 4e-25

Query Start/End: Original strand, 15 - 193

Target Start/End: Original strand, 45019020 - 45019198

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	45019020	gacatcacctccggagggtattctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	45019119	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttc	193	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|
T	45019120	tatgggtatggcactggtattgccattgtgtgtagctggcaaagtcgaaggcagttgtggttggcatctgaaatggttc	45019198	T

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Target: chr1; HSP #5

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 30 - 141

Target Start/End: Original strand, 41294317 - 41294428

Alignment:

Q	30	gggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagtatggcact	129	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\| \|
T	41294317	gggtaccctgcatgctgctgcatcaaatactgggattgctggaagtaggtatttgctcggttagtggcgtccagcatgttccaagtgtaagtatggcatt	41294416	T

Q	130	gatgttgccatt	141	Q
		\| \| \|\|\|\|\|\|\|\|
T	41294417	ggtattgccatt	41294428	T

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Target: scaffold0045 (Bit Score: 79; Significance: 5e-37; HSPs: 1)

Name: scaffold0045

Description:

Target: scaffold0045; HSP #1

Raw Score: 79; E-Value: 5e-37

Query Start/End: Original strand, 23 - 201

Target Start/End: Complemental strand, 6106 - 5928

Alignment:

Q	23	ctccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagta	122	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|
T	6106	ctccggagggtaccctgcttgctgttgcatcagatattgggactgctggaagtatgtgttggctcggttagtggctgccagcatgttccaagtgtgagta	6007	T

Q	123	tggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	6006	tggcactgatgttgccattgtgcgtagctggaaaagtcgaaggcagtcgtgggtggaatctgaaatggttcggaccctg	5928	T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 76; E-Value: 3e-35

Query Start/End: Original strand, 30 - 141

Target Start/End: Original strand, 8049971 - 8050082

Alignment:

Q	30	gggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagtatggcact	129	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	8049971	gggtaccctgtctgctgccgcatcaaatactgagactgctaaaaatatgtgttagcacggttagttgcctccagcatgtttcatgtatgagtattgcact	8050070	T

Q	130	gatgttgccatt	141	Q
		\| \|\|\|\|\|\|\|\|\|\|
T	8050071	ggtgttgccatt	8050082	T

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Target: chr3; HSP #2

Raw Score: 68; E-Value: 2e-30

Query Start/End: Original strand, 30 - 169

Target Start/End: Complemental strand, 9573973 - 9573834

Alignment:

Q	30	gggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagtatggcact	129	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	9573973	gggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatgtatgggtatggcact	9573874	T

Q	130	gatgttgccattatgcgtagcaggcaaagtcaaaggcagc	169	Q
		\| \| \|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	9573873	ggtattgccattgagcgaagcttgcaaagtcaaaagcagc	9573834	T

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Target: scaffold0510 (Bit Score: 75; Significance: 1e-34; HSPs: 2)

Name: scaffold0510

Description:

Target: scaffold0510; HSP #1

Raw Score: 75; E-Value: 1e-34

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 5885 - 5759

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5885	gacatcacctccggtgggtaccctgcctgctgctgcatcaaatactgagactgctgaagatatgtattagcacggttagttgagtccagcatgttccatg	5786	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	5785	catgagtatggcactggtattgccatt	5759	T

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Target: scaffold0510; HSP #2

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 30 - 141

Target Start/End: Complemental strand, 12303 - 12192

Alignment:

Q	30	gggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagtatggcact	129	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\| \|
T	12303	gggtaccctgcatgctgctgcatcaaatactgggattgctggaagtaggtatttgctcggttagtggcgtccagcatgttccaagtgtaagtatggcatt	12204	T

Q	130	gatgttgccatt	141	Q
		\| \| \|\|\|\|\|\|\|\|
T	12203	ggtattgccatt	12192	T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 6)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 71; E-Value: 3e-32

Query Start/End: Original strand, 15 - 201

Target Start/End: Original strand, 14290948 - 14291134

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	14290948	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	14291047	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	14291048	tatgggtatggcactggtattgccattgtgtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	14291134	T

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Target: chr7; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 8189878 - 8189692

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	8189878	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	8189779	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	8189778	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	8189692	T

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Target: chr7; HSP #3

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 48350515 - 48350389

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48350515	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	48350416	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	48350415	tatgggtatggcactggtattgccatt	48350389	T

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Target: chr7; HSP #4

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 23 - 201

Target Start/End: Complemental strand, 1946140 - 1945963

Alignment:

Q	23	ctccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagta	122	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|
T	1946140	ctccggagggtaccctgcttgttgctgcatcagatactgggattgctggaagtaggtgtttgcttggttagtggcggccagcatgttccaagtgtgcata	1946041	T

Q	123	tggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\| \|\| \|\|\|\|\|\|\|\| \|\| \| \|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1946040	ttgctttgatgttgacactgggcatagcttgcaaagtcgaaggcag-cgtggatggggtctgaaatggttcgggccctg	1945963	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 29 - 201

Target Start/End: Original strand, 15944314 - 15944486

Alignment:

Q	29	agggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagtatggcac	128	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\| \|\|
T	15944314	agggtaccctgcttgttgctgcatcagatactgggattgctggaagtaggtatttgctcggttagtggcggccagcatgttccaagtgggcacattgctt	15944413	T

Q	129	tgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15944414	tgatgttgccactgggcaaagcttgcaaagtcgaaggcagtcgtggatggggtttgaaatggttcgggccctg	15944486	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 23 - 201

Target Start/End: Original strand, 1943884 - 1944062

Alignment:

Q	23	ctccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatgtatgagta	122	Q
		\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\| \|\| \|\| \|\| \|\|
T	1943884	ctccggaggataccctgcttattgctgcatcagatactgggattgctgaaagtaggtgtttgctcgattagtggcggccaacatgttacaagtgtgcata	1943983	T

Q	123	tggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\| \|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1943984	ttgctttgatgttgccactgggcatagcttgcaaagtcgaaggcagccgtggatggggtctgaaatggttcgggccctg	1944062	T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 6)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 4715523 - 4715337

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	4715523	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	4715424	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	4715423	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	4715337	T

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Target: chr6; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Original strand, 34652038 - 34652164

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34652038	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	34652137	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	34652138	tatgggtatggcactggtattgccatt	34652164	T

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Target: chr6; HSP #3

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 4023622 - 4023436

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	4023622	gacatcacctccggagggtaatctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	4023523	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	4023522	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	4023436	T

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Target: chr6; HSP #4

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 4709913 - 4709727

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\| \|\|\|\| \|\| \| \|\|\|\|\| \|\| \|\|\|\|\| \|
T	4709913	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcatggtttgtaggttccagtatattccaag	4709814	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	4709813	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	4709727	T

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Target: chr6; HSP #5

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 4735329 - 4735143

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\| \|\|\|\| \|\| \| \|\|\|\|\| \|\| \|\|\|\|\| \|
T	4735329	gacatcacctccggagggtaccctgcttgcttctgcactaaatactgagactgctgaagataagtattagcatggtttgtaggttccagtatattccaag	4735230	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	4735229	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	4735143	T

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Target: chr6; HSP #6

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 7066669 - 7066483

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\| \|
T	7066669	gacatcacctccggagggtaatctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacagtttgtagctcccagcatattccaag	7066570	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	7066569	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtgattggcatctgaaatggttcggaccctg	7066483	T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 4)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Original strand, 2963135 - 2963261

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2963135	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	2963234	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	2963235	tatgggtatggcactggtattgccatt	2963261	T

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Target: chr5; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Original strand, 29977149 - 29977275

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29977149	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	29977248	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	29977249	tatgggtatggcactggtattgccatt	29977275	T

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Target: chr5; HSP #3

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 30019493 - 30019367

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30019493	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg	30019394	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	30019393	tatgggtatggcactggtattgccatt	30019367	T

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Target: chr5; HSP #4

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 100 - 201

Target Start/End: Original strand, 22354153 - 22354254

Alignment:

Q	100	ccagcatgttccatgtatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccc	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	22354153	ccagcatgttccaagtgtgcatattgctttgatgttgccactgggcatagcttgcaaagtcgaaggcagccgtggatggggtctgaaatggttcgggccc	22354252	T

Q	200	tg	201	Q
		\|\|
T	22354253	tg	22354254	T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 15 - 141

Target Start/End: Complemental strand, 8010353 - 8010227

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8010353	gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatt	8010254	T

Q	115	tatgagtatggcactgatgttgccatt	141	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|
T	8010253	tatgggtatggcactggtattgccatt	8010227	T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 15 - 201

Target Start/End: Original strand, 2160837 - 2161023

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	2160837	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgaggctgctgaagataagtattagcacggtttgtagcttccagcatattccaag	2160936	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	2160937	tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	2161023	T

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Target: chr2; HSP #2

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 34838237 - 34838051

Alignment:

Q	15	gacatcaactccgtagggtaccctgcctgttgctgcatcaaatactgagaatgctggaaatatgtgttagcacggttagttgcctccagcatgttccatg	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|
T	34838237	gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag	34838138	T

Q	115	tatgagtatggcactgatgttgccattatgcgtagcaggcaaagtcaaaggcagccatggatggaatttgaaatggttcgggccctg	201	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	34838137	tatggttatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctg	34838051	T

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