View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6896_high_3 (Length: 236)
Name: NF6896_high_3
Description: NF6896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6896_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 36886094 - 36886308
Alignment:
| Q |
15 |
agttttaatgttacacatattatttgatccttatttggaaaagttcagattgcattcatggtttgttttcacagatccaaaaaatttcaaggattcaagt |
114 |
Q |
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| T |
36886094 |
agttttaatgttgcacatattatttgatccttatttggaaaagttcagattgcattcatggtttgctttcacagatccataaaatttcaaggattcaagt |
36886193 |
T |
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| Q |
115 |
acctaaagttttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagat |
214 |
Q |
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| T |
36886194 |
atctaaagttttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagat |
36886293 |
T |
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| Q |
215 |
tatctaagccagtaa |
229 |
Q |
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| T |
36886294 |
tatctaagccagtaa |
36886308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 22556739 - 22556774
Alignment:
| Q |
189 |
gaagaagccatacatttctttgagattatctaagcc |
224 |
Q |
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| T |
22556739 |
gaagaagacatacatttctttgagattatctaagcc |
22556774 |
T |
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