View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6896_low_1 (Length: 597)
Name: NF6896_low_1
Description: NF6896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6896_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 46990181 - 46989596
Alignment:
| Q |
1 |
tcaattcacccgctttgcaagatcctcatggaagtgaggatgctagttccaatctcgccaataagattaacaatgaatgtagtgatgcttctcaagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46990181 |
tcaattcacccgctttgcaagatcctcatggaagtgaggatgctagttccaatctcgccaataagattaacaatgaatgtagtgatgcttctcaagatat |
46990082 |
T |
|
| Q |
101 |
aagcaatcaaggtttaactggcagaactgtgtgctccaaatctcattctgaggaaagaatatctgattttgtttcagaaaactgtgcttctccttctaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46990081 |
aagcaatcaaggtttaactggcagaactgtgtgctccaaatctcattctgaggaaagaatatctaattttgtttcagaaaactgtgcttctccttctaat |
46989982 |
T |
|
| Q |
201 |
tctagtcatggggtactcaaaaagaaaattaaaatatcgatgtcttctcccatcaatgatccatcacccaaatgtcaactcatttcgccaaatgatactt |
300 |
Q |
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| T |
46989981 |
tctagtcatggggtactcaaaaagaaaattaaaatatcgatgtcttctcccatcaatgatccatcacccaaatgtcaactcatttcgccaaatgatactt |
46989882 |
T |
|
| Q |
301 |
ctacaaatggtcttccatcggatcactcagatagtcatgaaatccgagctttgggtcaagcaactgcatgttctgacctagctactactgtaaagaacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46989881 |
ctacaaatggtcttccatcggatcactcagatagtcatgaaatccgagctttgggtcaagcaactgcatgttctgacctagctactactgtaaagaacat |
46989782 |
T |
|
| Q |
401 |
ggttgaacctgcttctgaggggaaaccccatgctttcaccgatttgaattgtgattcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtg |
500 |
Q |
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| T |
46989781 |
ggttgaacctgcttctgaggggaaaccccatgctttcactgatttgaattgtgattcaccaggtcttaaccaaaatcctgtgtcggattctcaagtagtg |
46989682 |
T |
|
| Q |
501 |
gataatgctttgtcttttaaagagtttgatatgaatgatgcccatgttgaggttctcgaagctggtcctttagtgaattcatctca |
586 |
Q |
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| T |
46989681 |
gataatgctttgtcttttaaagagtttgatatgaatgatgcccatgttgaggttctcgaagctggtcctttagtgaattcatctca |
46989596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 429 - 586
Target Start/End: Complemental strand, 46989321 - 46989164
Alignment:
| Q |
429 |
catgctttcaccgatttgaattgtgattcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtggataatgctttgtcttttaaagagtttg |
528 |
Q |
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|||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||| |||||| |
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| T |
46989321 |
catgctatcactgatatgaattgtgattcaccagggcttgaccaaaatcctgtgtcggactctcaagtggtggataatgatttgtctttaaaaaagtttg |
46989222 |
T |
|
| Q |
529 |
atatgaatgatgcccatgttgaggttctcgaagctggtcctttagtgaattcatctca |
586 |
Q |
| |
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||||||||||| ||| || | |||||| |||||||||||||||| |||||||||||| |
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| T |
46989221 |
atatgaatgattcccttggtttggttcttgaagctggtcctttagggaattcatctca |
46989164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 579
Target Start/End: Complemental strand, 46989098 - 46988955
Alignment:
| Q |
436 |
tcaccgatttgaattgtgattcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtggataatgctttgtcttttaaagagtttgatatgaa |
535 |
Q |
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|||| ||| ||||||||||||| ||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||| ||||||||||| |
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| T |
46989098 |
tcactgatatgaattgtgattccccaggacttgaccaaaatcctgtgtcggattctcgagtggtggataatgctttgtcttgtaaagaatttgatatgaa |
46988999 |
T |
|
| Q |
536 |
tgatgcccatgttgaggttctcgaagctggtcctttagtgaatt |
579 |
Q |
| |
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|||| ||||||| |||||||| ||| |||||||||||| ||||| |
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| T |
46988998 |
tgatacccatgtcgaggttcttgaatctggtcctttagcgaatt |
46988955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 429 - 580
Target Start/End: Complemental strand, 46989537 - 46989386
Alignment:
| Q |
429 |
catgctttcaccgatttgaattgtgattcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtggataatgctttgtcttttaaagagtttg |
528 |
Q |
| |
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|||||| |||| ||| ||||||||||||||||||| || |||||||||||||||| |||||| | ||| | |||||||| | ||||||| ||| |||||| |
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| T |
46989537 |
catgctatcactgatatgaattgtgattcaccagggctagaccaaaatcctgtgtcggattcccgagtggcggataatgatatgtctttaaaaaagtttg |
46989438 |
T |
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| Q |
529 |
atatgaatgatgcccatgttgaggttctcgaagctggtcctttagtgaattc |
580 |
Q |
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| T |
46989437 |
atatgaatgatgcccatgttgaggttgttgaagctggtcctttagtgaattc |
46989386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 579
Target Start/End: Complemental strand, 46988648 - 46988526
Alignment:
| Q |
454 |
attcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtggataatgctttgtcttttaaagagtttgatatgaatgatgcccatgttgaggt |
553 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| | | ||| | ||| ||||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
46988648 |
attcaccaggtcttgaccaaaatcctgtggtggattctcaactggcggaaagtgc---gtcttgtaaagagtttgatatgaatgatacccatgtcgaggt |
46988552 |
T |
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| Q |
554 |
tctcgaagctggtcctttagtgaatt |
579 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
46988551 |
tcttgaagctggtcctttagtgaatt |
46988526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 584
Target Start/End: Complemental strand, 46988864 - 46988734
Alignment:
| Q |
454 |
attcaccaggtcttgaccaaaatcctgtgttggattctcaagtagtggataatgctttgtcttttaaagagtttgatatgaatgatgcccatgttgaggt |
553 |
Q |
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| T |
46988864 |
attcaccagggcatgaccgaaatcctgtgcttgattctcaagtgacggataatgctttgccttttaaagagtttgatatgaatgatgtccgtgatgaggt |
46988765 |
T |
|
| Q |
554 |
tctcgaagctggtcctttagtgaattcatct |
584 |
Q |
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| | ||||| |||||| ||||||||||||| |
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| T |
46988764 |
tgttgaagccagtccttcagtgaattcatct |
46988734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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