View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6896_low_2 (Length: 515)
Name: NF6896_low_2
Description: NF6896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6896_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 62 - 502
Target Start/End: Original strand, 8187863 - 8188303
Alignment:
| Q |
62 |
tgcagactttaatcctttgtttctaaaggaaacactttcggatgcttcatcaagtttgagttctgaaggtgatggattggatcgtaatgttgtagatagt |
161 |
Q |
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| T |
8187863 |
tgcagactttaatcctttgtttctaaaggaaacactttcagatgcttcatcaagtttgagttctgaaggtgatggattggatcgtaatgttgtagatagt |
8187962 |
T |
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| Q |
162 |
gggccatctatggatatagatttggaaaagataacggataatgagcaaatctgtagtgcagtagattctgaacatggcgaggaggaaattgttttagaag |
261 |
Q |
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| T |
8187963 |
gggccatctatggatatagatttggaaaagataacggataatgagcaaatctgtagtgcagtagattctgaacatggcgaggaggaaattgttttagaag |
8188062 |
T |
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| Q |
262 |
cggcaggtatgatatctcaattggagattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacac |
361 |
Q |
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| T |
8188063 |
cggcaggtatgatatctcaattggagattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacac |
8188162 |
T |
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| Q |
362 |
aacgaaaccccgaagcccagtgatagacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgag |
461 |
Q |
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| T |
8188163 |
aacgaaaccccgaagcccagtgatagacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgag |
8188262 |
T |
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| Q |
462 |
cttgagacctttcttcaagagaccgatgatgaagatgatgt |
502 |
Q |
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| T |
8188263 |
cttgagacctttcttcaagagactgatgatgaagatgatgt |
8188303 |
T |
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