View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6896_low_4 (Length: 480)
Name: NF6896_low_4
Description: NF6896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6896_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 84 - 474
Target Start/End: Complemental strand, 52938687 - 52938297
Alignment:
| Q |
84 |
atggacatcagaaatcacatagccaaattttacagaataatctgtaaaacataccagtttttgcagaaccagaacctagctgtccatgtttgttccatcc |
183 |
Q |
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| T |
52938687 |
atggacagcagaaatcacatagccaaattttacagaataatctgtaaaacataccagtttttgcagaaccagaacctagctgtccatgtttgttccatcc |
52938588 |
T |
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| Q |
184 |
aaatgctaaggaatttccatcctctgtaacaactacagtatggctcttcccagctccagcttgaacaatcttgtatctacaattcaaacgtcaacaacaa |
283 |
Q |
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| T |
52938587 |
aaatgctaaggaatttccatcctctgtaacaactacagtatggctcttcccagctccagcttgaacaatcttgtatctacaattcaaacgtcagcaacaa |
52938488 |
T |
|
| Q |
284 |
tttagcataacaagaaataataacaaaacacacaggaagcaaaattaaccattaaattgaaaacacaaacataaacatgtatgcaacaattgtaaaaaac |
383 |
Q |
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| T |
52938487 |
tttagcataacaagaaataataacaaaacgcacaggaagcaaaattaaccattaaattgaaaacacaaacataaacatgtatgcaacaattgtaaaaaac |
52938388 |
T |
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| Q |
384 |
atacatcattttcagagcataaattcttccttataaaaaacagaaaatccaaaactcactttgaaagttcagaaaccacagttggcctatc |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52938387 |
atacatcattttcagagcataaattcttccttataaaaaacagaaaatccaaaactcactttgaaagttcagaaaccacagttggcctatc |
52938297 |
T |
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